Evidence map›Paper›PMID 23151486›Full record

ArticleGenes and immunity2013

Variation in the TLR10/TLR1/TLR6 locus is the major genetic determinant of interindividual difference in TLR1/2-mediated responses.

C Mikacenic, A P Reiner, T D Holden, D A Nickerson, M M Wurfel

Open access · greenAbstract read
In one paragraph

Article in Genes and immunity, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 1 synthesis or guideline pooled it, 64 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

C MikacenicDivision of Pulmonary and Critical Care Medicine, Department of Medicine, University of Washington, Seattle, WA 98104, USA. cmikacen@uw.edu
A P Reiner
T D Holden
D A Nickerson
M M Wurfel
University of Washington · USSeattle University · US

Funding

Systems BiologyU19AG023122 · NIA · TRANSLATIONAL GENOMICS RESEARCH INST · PI Thomas Girke, NICHOLAS Joseph SCHORK · 2004 to 2026
$102.6M
Variation in Human Innate ImmunityU54AI057141 · NIAID · UNIVERSITY OF WASHINGTON · PI COOKSON, BRAD T · 2003 to 2013
$102.3M
RESPIRATORY RESEARCH TRAINING PROGRAMT32HL007287 · NHLBI · UNIVERSITY OF WASHINGTON · PI Kristina Anne Crothers, David J. Horne · 1985 to 2026
$16.7M
Genetic control of gene expression during innate immune activationR01HL089807 · NHLBI · UNIVERSITY OF WASHINGTON · PI WURFEL, MARK M · 2007 to 2011
$2.6M
NHLBI NIH HHS R01 HL089807NHLBI NIH HHS R01 HL089807-01NHLBI NIH HHS T32 HL007287NHLBI NIH HHS T32 HL 7287-33NIAID NIH HHS U54 AI057141NIA NIH HHS U19 AG023122NIA NIH HHS U19AG023122
6 · The paper itself

Abstract

Toll-like receptor (TLR)-mediated innate immune responses are important in early host defense. Using a candidate gene approach, we previously identified genetic variation within TLR1 that is associated with hyper-responsiveness to a TLR1/2 agonist in vitro and with death and organ dysfunction in patients with sepsis. Here we report a genome-wide association study (GWAS) designed to identify genetic loci controlling whole blood cytokine responses to the TLR1/2 lipopeptide agonist, Pam(3)CSK(4) (N-palmitoyl-S-dipalmitoylglyceryl Cys-Ser-(Lys)(4)) ex vivo. We identified a very strong association (P<1 × 10(-27)) between genetic variation within the TLR10/1/6 locus on chromosome 4, and Pam(3)CSK(4)-induced cytokine responses. This was the predominant association explaining over 35% of the population variance for this phenotype. Notably, strong associations were observed within TLR10, suggesting that genetic variation in TLR10 may influence bacterial lipoprotein-induced responses. These findings establish the TLR10/1/6 locus as the dominant common genetic factor controlling interindividual variability in Pam(3)CSK(4)-induced whole blood responses in the healthy population.

Indexed as

AdultChromosomes, Human, Pair 4CytokinesFemaleGenes, DominantGenome-Wide Association StudyHumansImmunity, InnateLipopeptidesMaleMiddle AgedPhenotypePolymorphism, GeneticToll-Like Receptor 1Toll-Like Receptor 10Toll-Like Receptor 2CytokinesLipopeptidesPam(3)CSK(4) peptideToll-Like Receptor 1Toll-Like Receptor 10Toll-Like Receptor 2Toll-Like Receptor 6Toll-Like Receptors

Identifiers

PMID23151486
PMCPMC3554851
OpenAlexW1997072127

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.