Evidence map›Paper›PMID 23150791›Full record

ArticleScientific reports2012

GTPases IF2 and EF-G bind GDP and the SRL RNA in a mutually exclusive manner.

Vladimir A Mitkevich, Viktoriya Shyp, Irina Yu Petrushanko, Aksel Soosaar, Gemma C Atkinson, Tanel Tenson, Alexander A Makarov, Vasili Hauryliuk

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Reaction dynamics analysis of a reconstitutedProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  6. Article
  7. Initiation of mRNA translation in bacteria: structural and dynamic aspects.Cellular and molecular life sciences : CMLS · 2015
    Review
  8. Role of a ribosomal RNA phosphate oxygen during the EF-G-triggered GTP hydrolysis.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Vladimir A MitkevichEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, Russia.
Viktoriya Shyp
Irina Yu Petrushanko
Aksel Soosaar
Gemma C Atkinson
Tanel Tenson
Alexander A Makarov
Vasili Hauryliuk
University of Tartu · EEEngelhardt Institute of Molecular Biology · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Translational GTPases (trGTPases) are involved in all four stages of protein biosynthesis: initiation, elongation, termination and ribosome recycling. The trGTPases Initiation Factor 2 (IF2) and Elongation Factor G (EF-G) respectively orchestrate initiation complex formation and translocation of the peptidyl-tRNA:mRNA complex through the bacterial ribosome. The ribosome regulates the GTPase cycle and efficiently discriminates between the GDP- and GTP-bound forms of these proteins. Using Isothermal Titration Calorimetry, we have investigated interactions of IF2 and EF-G with the sarcin-ricin loop of the 23S rRNA, a crucial element of the GTPase-associated center of the ribosome. We show that binding of IF2 and EF-G to a 27 nucleotide RNA fragment mimicking the sarcin-ricin loop is mutually exclusive with that of GDP, but not of GTP, providing a mechanism for destabilization of the ribosome-bound GDP forms of translational GTPases.

Indexed as

BacteriaBacterial ProteinsGuanosine TriphosphatePeptide Elongation Factor GProkaryotic Initiation Factor-2Protein BindingRibosomesRNA, MessengerRNA, Ribosomal, 23SRNA, Transfer, Amino AcylBacterial ProteinsGuanosine TriphosphatePeptide Elongation Factor GProkaryotic Initiation Factor-2RNA, MessengerRNA, Ribosomal, 23SRNA, Transfer, Amino AcyltRNA, peptidyl-

Identifiers

PMID23150791
PMCPMC3496166
OpenAlexW2055333983

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.