Evidence map›Paper›PMID 23150614›Full record

ArticleInvestigative ophthalmology & visual science2012

An ENU mutagenesis screen in zebrafish for visual system mutants identifies a novel splice-acceptor site mutation in patched2 that results in Colobomas.

Jiwoon Lee, Ben D Cox, Christina M S Daly, Chanjae Lee, Richard J Nuckels, Rachel K Tittle, Rosa A Uribe, Jeffrey M Gross

Open access · bronzeAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Forward genetic analysis using OCT screening identifiesProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  9. Article
  10. Article
  11. Novel Ethanol-Sensitive Mutants Identified in an F3 Forward Genetic Screen.Alcoholism, clinical and experimental research · 2020
    Article
  12. Review
  13. Zebrafish mab21l2 mutants possess severe defects in optic cup morphogenesis, lens and cornea development.Developmental dynamics : an official publication of the American Association of Anatomists · 2019
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Jiwoon LeeSection of Molecular Cell and Developmental Biology, Institute of Cell and Molecular Biology, The University of Texas at Austin, Texas 78712, USA.
Ben D Cox
Christina M S Daly
Chanjae Lee
Richard J Nuckels
Rachel K Tittle
Rosa A Uribe
Jeffrey M Gross
The University of Texas at Austin · US

Funding

Genetic Regulation of Eye Development in ZebrafishR01EY018005 · NEI · UNIVERSITY OF TEXAS AT AUSTIN · PI GROSS, JEFFREY · 2008 to 2017
$3.3M
The role of DNA methylation in lens fiber cell terminal differentiationF32EY020745 · NEI · UNIVERSITY OF TEXAS AT AUSTIN · PI TITTLE, RACHEL K. · 2010 to 2012
$153k
The In Vivo Function of Id2 in Retinal Proliferation and DifferentiationF31EY019239 · NEI · UNIVERSITY OF TEXAS AT AUSTIN · PI URIBE, ROSA A · 2008 to 2011
$138k
NEI NIH HHS F31 EY019239NEI NIH HHS F31-EY19239NEI NIH HHS F32 EY020745NEI NIH HHS F32-EY20745NEI NIH HHS R01 EY018005NEI NIH HHS R01-EY18005
6 · The paper itself

Abstract

purposeTo identify recessive mutations affecting development and/or maintenance of the zebrafish visual system.

methodsA three-generation ENU (N-Nitroso-N-ethylurea)-based forward genetic screen was performed. F3 embryos were screened visually from 1 to 5 days postfertilization (dpf) for ocular abnormalities, and 5 dpf embryos were fixed and processed for cryosectioning, after which eye sections were screened for defects in cellular organization within the retina, lens, and cornea. A combination of PCR and DNA sequencing, in situ hybridization, and pharmacological treatments were used to clone and characterize a coloboma mutant.

resultsA total of 126 F2 families were screened, and, from these, 18 recessive mutations were identified that affected eye development. Phenotypes included lens malformations and cataracts, photoreceptor defects, oculocutaneous albinism, microphthalmia, and colobomas. Analysis of one such coloboma mutant, uta(1), identified a splice-acceptor mutation in the patched2 gene that resulted in an in-frame deletion of 19 amino acids that are predicted to contribute to the first extracellular loop of Patched2. ptch2(uta1) mutants possessed elevated Hedgehog (Hh) pathway activity, and blocking the Hh pathway with cyclopamine prevented colobomas in ptch2(uta1) mutant embryos.

conclusionsWe have identified 18 recessive mutations affecting development of the zebrafish visual system and we have characterized a novel splice-acceptor site mutation in patched2 that results in enhanced Hh pathway activity and colobomas.

Indexed as

Alkylating AgentsAllelesAmino Acid SequenceAnimalsBase SequenceColobomaEmbryo, NonmammalianEthylnitrosoureaEyeFemaleGenes, RecessiveHedgehog ProteinsIn Situ HybridizationLens, CrystallineMaleMembrane ProteinsAlkylating AgentscyclopamineEthylnitrosoureaHedgehog ProteinsMembrane Proteinsptch1 protein, zebrafishRNA Splice SitesVeratrum AlkaloidsZebrafish Proteins

Identifiers

PMID23150614
PMCPMC3522441
OpenAlexW1995358318

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.