Evidence map›Paper›PMID 23149092›Full record

ReviewCurrent opinion in chemical biology2013

Photocrosslinking approaches to interactome mapping.

Nam D Pham, Randy B Parker, Jennifer J Kohler

Abstract readReview
In one paragraph

Review in Current opinion in chemical biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed.

  1. Article
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  3. Article
  4. Review
  5. Article
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  8. Article
  9. Review
  10. Review
  11. Article
  12. Review
  13. Rapid capture of small peptide binders.Nature reviews. Chemistry · 2023
    Article
  14. Review
  15. Article
  16. Article
  17. Photocrosslinkable natural polymers in tissue engineering.Frontiers in bioengineering and biotechnology · 2023
    Review
  18. Article
  19. Article
  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Nam D PhamDepartment of Biochemistry, 5323 Harry Hines Boulevard, University of Texas Southwestern Medical Center, Dallas, TX 75390-9038, USA.
Randy B Parker
Jennifer J Kohler

Funding

MECHANISMS OF DRUG ACTION AND DISPOSITIONT32GM007062 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI MANGELSDORF, DAVID J · 1985 to 2020
$7.4M
Study of sialoside function using photocrosslinking sialic acidR01GM090271 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI KOHLER, JENNIFER J · 2009 to 2021
$4.4M
Sialic acid has putative signaling roles in muscle disorders of agingF30AG040909 · NIA · UT SOUTHWESTERN MEDICAL CENTER · PI PHAM, NAM · 2011 to 2014
$119k
NIA NIH HHS F30 AG040909NIA NIH HHS F30AG040909NIGMS NIH HHS R01 GM090271NIGMS NIH HHS R01GM090271NIGMS NIH HHS T32 GM007062NIGMS NIH HHS T32GM007062
6 · The paper itself

Abstract

Photocrosslinking approaches can be used to map interactome networks within the context of living cells. Photocrosslinking methods rely on use of metabolic engineering or genetic code expansion to incorporate photocrosslinking analogs of amino acids or sugars into cellular biomolecules. Immunological and mass spectrometry techniques are used to analyze crosslinked complexes, thereby defining specific interactomes. Because photocrosslinking can be conducted in native, cellular settings, it can be used to define context-dependent interactions. Photocrosslinking methods are also ideally suited for determining interactome dynamics, mapping interaction interfaces, and identifying transient interactions in which intrinsically disordered proteins and glycoproteins engage. Here we discuss the application of cell-based photocrosslinking to the study of specific problems in immune cell signaling, transcription, membrane protein dynamics, nucleocytoplasmic transport, and chaperone-assisted protein folding.

Indexed as

Active Transport, Cell NucleusAnimalsCross-Linking ReagentsHumansPhotochemical ProcessesProtein BindingProtein FoldingProtein Interaction MappingProteinsProteomicsSignal TransductionTranscriptional ActivationCross-Linking ReagentsProteins

Identifiers

PMID23149092
PMCPMC3594551

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.