Evidence map›Paper›PMID 23145819›Full record

ArticleBiochemistry2012

New aspects of the phosphatase VHZ revealed by a high-resolution structure with vanadate and substrate screening.

Vyacheslav I Kuznetsov, Alvan C Hengge, Sean J Johnson

Abstract read
In one paragraph

Article in Biochemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Vyacheslav I KuznetsovDepartment of Chemistry and Biochemistry, Utah State University, Logan, UT 84322-0300, USA.
Alvan C Hengge
Sean J Johnson
Utah State University · US

Funding

Mechanisms of Phosphoryl TransferR01GM047297 · NIGMS · UTAH STATE UNIVERSITY · PI HENGGE, ALVAN C · 2000 to 2010
$2.4M
MECHANISMS OF ACYL AND PHOSPHORYL TRANSFERR29GM047297 · NIGMS · UTAH STATE UNIVERSITY · PI HENGGE, ALVAN C · 1995 to 2000
$36k
NIGMS NIH HHS GM47297NIGMS NIH HHS R01 GM047297NIGMS NIH HHS R29 GM047297
6 · The paper itself

Abstract

The recently discovered 150-residue human VHZ (VH1-related protein, Z member) is one of the smallest protein tyrosine phosphatases (PTPs) known and contains only the minimal structural elements common to all PTPs. We report a substrate screening analysis and a crystal structure of the VHZ complex with vanadate at 1.1 Å resolution, with a detailed structural comparison with other members of the protein tyrosine phosphatase family, including classical tyrosine-specific protein tyrosine phosphatases (PTPs) and dual-specificity phosphatases (DSPs). A screen with 360 phosphorylated peptides shows VHZ efficiently catalyzes the hydrolysis of phosphotyrosine (pY)-containing peptides but exhibits no activity toward phosphoserine (pS) or phosphothreonine (pT) peptides. The new structure reveals a deep and narrow active site more typical of the classical tyrosine-specific PTPs. Despite the high degrees of structural and sequence similarity between VHZ and classical PTPs, its general acid IPD-loop is most likely conformationally rigid, in contrast to the flexible WPD counterpart of classical PTPs. VHZ also lacks substrate recognition domains and other domains typically found on classical PTPs. It is therefore proposed that VHZ is more properly classified as an atypical PTP rather than an atypical DSP, as has been suggested.

Indexed as

Base SequenceCrystallizationDNA PrimersHydrogen BondingModels, MolecularMolecular StructureProtein Tyrosine PhosphatasesSubstrate SpecificityVanadatesDNA PrimersProtein Tyrosine PhosphatasesVanadates

Identifiers

PMID23145819
PMCPMC3581349
OpenAlexW2076556428

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.