Evidence map›Paper›PMID 23144738›Full record

ArticlePloS one2012

AP-3 and Rabip4' coordinately regulate spatial distribution of lysosomes.

Viorica Ivan, Emma Martinez-Sanchez, Livia E Sima, Viola Oorschot, Judith Klumperman, Stefana M Petrescu, Peter van der Sluijs

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Lysosomes in cancer-living on the edge (of the cell).Current opinion in cell biology · 2016
    Review
  14. Article
  15. Article
  16. Article
  17. The role of the cytoskeleton and molecular motors in endosomal dynamics.Seminars in cell & developmental biology · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Viorica IvanDepartment of Cell Biology, University Medical Center Utrecht, Utrecht, The Netherlands.
Emma Martinez-Sanchez
Livia E Sima
Viola Oorschot
Judith Klumperman
Stefana M Petrescu
Peter van der Sluijs
University Medical Center Utrecht · NLRomanian Academy · ROUtrecht University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The RUN and FYVE domain proteins rabip4 and rabip4' are encoded by RUFY1 and differ in a 108 amino acid N-terminal extension in rabip4'. Their identical C terminus binds rab5 and rab4, but the function of rabip4s is incompletely understood. We here found that silencing RUFY1 gene products promoted outgrowth of plasma membrane protrusions, and polarized distribution and clustering of lysosomes at their tips. An interactor screen for proteins that function together with rabip4' yielded the adaptor protein complex AP-3, of which the hinge region in the β3 subunit bound directly to the FYVE domain of rabip4'. Rabip4' colocalized with AP-3 on a tubular subdomain of early endosomes and the extent of colocalization was increased by a dominant negative rab4 mutant. Knock-down of AP-3 had an ever more dramatic effect and caused accumulation of lysosomes in protrusions at the plasma membrane. The most peripheral lysosomes were localized beyond microtubules, within the cortical actin network. Our results uncover a novel function for AP-3 and rabip4' in regulating lysosome positioning through an interorganellar pathway.

Indexed as

Adaptor Protein Complex 3Adaptor Proteins, Signal TransducingAnimalsBlotting, WesternCell LineCell MembraneEndosomesFibroblastsFlow CytometryHEK293 CellsHeLa CellsHumansIntracellular Signaling Peptides and ProteinsLysosomal-Associated Membrane Protein 1LysosomesMice, Mutant StrainsAdaptor Protein Complex 3Adaptor Proteins, Signal Transducingearly endosome antigen 1Intracellular Signaling Peptides and ProteinsLysosomal-Associated Membrane Protein 1Protein Subunitsrab5 GTP-Binding ProteinsRUFY1 protein, humanTetraspanin 30Vesicular Transport Proteins

Identifiers

PMID23144738
PMCPMC3483219
OpenAlexW2090536287

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.