Evidence map›Paper›PMID 23144625›Full record

ArticlePLoS genetics2012

Microhomology directs diverse DNA break repair pathways and chromosomal translocations.

Diana D Villarreal, Kihoon Lee, Angela Deem, Eun Yong Shim, Anna Malkova, Sang Eun Lee

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 110 citations in OpenAlex.

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  13. Whole Genome Sequencing Analysis of Effects of CRISPR/Cas9 inJournal of fungi (Basel, Switzerland) · 2022
    Article
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10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Diana D VillarrealDepartment of Cellular and Structural Biology, University of Texas Health Science Center at San Antonio, San Antonio, Texas, United States of America.
Kihoon Lee
Angela Deem
Eun Yong Shim
Anna Malkova
Sang Eun Lee
The University of Texas Health Science Center at San Antonio · USIndiana University – Purdue University Indianapolis · US

Funding

Mechanisms of Error Prone Repair of DNA BreaksR01GM071011 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LEE, SANG EUN · 2004 to 2021
$4.5M
Cancer Biology Training ProgramT32CA148724 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Pei Wang, Feng-Chun Yang · 2011 to 2026
$3.3M
Amplification of risk resulting from mis-routing of double-strand break repairR01GM084242 · NIGMS · UNIVERSITY OF IOWA · PI MALKOVA, ANNA L · 2008 to 2017
$2.7M
Etiology of Chromosome TranslocationsR01GM083010 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI LEE, SANG EUN · 2008 to 2011
$1.2M
Effect of Spatial Proximity on Chromosomal TranslocationsF30CA168173 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI VILLARREAL, DIANA · 2012 to 2015
$133k
NCI NIH HHS F30 CA168173NIGMS NIH HHS GM071011NIGMS NIH HHS GM083010NIGMS NIH HHS GM083010-02S1NIGMS NIH HHS GM084242NIGMS NIH HHS R01 GM071011NIGMS NIH HHS R01 GM083010NIGMS NIH HHS R01 GM084242
6 · The paper itself

Abstract

Chromosomal structural change triggers carcinogenesis and the formation of other genetic diseases. The breakpoint junctions of these rearrangements often contain small overlapping sequences called "microhomology," yet the genetic pathway(s) responsible have yet to be defined. We report a simple genetic system to detect microhomology-mediated repair (MHMR) events after a DNA double-strand break (DSB) in budding yeast cells. MHMR using >15 bp operates as a single-strand annealing variant, requiring the non-essential DNA polymerase subunit Pol32. MHMR is inhibited by sequence mismatches, but independent of extensive DNA synthesis like break-induced replication. However, MHMR using less than 14 bp is genetically distinct from that using longer microhomology and far less efficient for the repair of distant DSBs. MHMR catalyzes chromosomal translocation almost as efficiently as intra-chromosomal repair. The results suggest that the intrinsic annealing propensity between microhomology sequences efficiently leads to chromosomal rearrangements.

Indexed as

DNA Breaks, Double-StrandedDNA End-Joining RepairChromosome AberrationsChromosomesDNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA RepairDNA ReplicationRecombination, GeneticSaccharomyces cerevisiaeTranslocation, GeneticDNA-Binding ProteinsDNA-Directed DNA Polymerase

Identifiers

PMID23144625
PMCPMC3493447
OpenAlexW1978418405

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.