Evidence map›Paper›PMID 23144601›Full record

ArticlePLoS computational biology2012

Functional inference of complex anatomical tendinous networks at a macroscopic scale via sparse experimentation.

Anupam Saxena, Hod Lipson, Francisco J Valero-Cuevas

Abstract read
In one paragraph

Article in PLoS computational biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

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5 · Who and what money

Authors and funding

3 authors.

Anupam SaxenaFaculty Building #369, Mechanical Engineering, Indian Institute of Technology, Kanpur, India.
Hod Lipson
Francisco J Valero-Cuevas

Funding

Structure &function of the fingers tendinous apparatusR01AR052345 · NIAMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI VALERO-CUEVAS, FRANCISCO J · 2005 to 2017
$3.7M
Control of finger movement and force for precision pinchR01AR050520 · NIAMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI VALERO-CUEVAS, FRANCISCO J · 2004 to 2014
$2.9M
NIAMS NIH HHS AR050520NIAMS NIH HHS AR052345NIAMS NIH HHS R01 AR050520NIAMS NIH HHS R01 AR052345
6 · The paper itself

Abstract

In systems and computational biology, much effort is devoted to functional identification of systems and networks at the molecular-or cellular scale. However, similarly important networks exist at anatomical scales such as the tendon network of human fingers: the complex array of collagen fibers that transmits and distributes muscle forces to finger joints. This network is critical to the versatility of the human hand, and its function has been debated since at least the 16(th) century. Here, we experimentally infer the structure (both topology and parameter values) of this network through sparse interrogation with force inputs. A population of models representing this structure co-evolves in simulation with a population of informative future force inputs via the predator-prey estimation-exploration algorithm. Model fitness depends on their ability to explain experimental data, while the fitness of future force inputs depends on causing maximal functional discrepancy among current models. We validate our approach by inferring two known synthetic Latex networks, and one anatomical tendon network harvested from a cadaver's middle finger. We find that functionally similar but structurally diverse models can exist within a narrow range of the training set and cross-validation errors. For the Latex networks, models with low training set error [<4%] and resembling the known network have the smallest cross-validation errors [∼5%]. The low training set [<4%] and cross validation [<7.2%] errors for models for the cadaveric specimen demonstrate what, to our knowledge, is the first experimental inference of the functional structure of complex anatomical networks. This work expands current bioinformatics inference approaches by demonstrating that sparse, yet informative interrogation of biological specimens holds significant computational advantages in accurate and efficient inference over random testing, or assuming model topology and only inferring parameters values. These findings also hold clues to both our evolutionary history and the development of versatile machines.

Indexed as

Models, BiologicalAlgorithmsBiomechanical PhenomenaComputational BiologyComputer SimulationFingersHumansReproducibility of ResultsTendons

Identifiers

PMID23144601
PMCPMC3493461

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.