Evidence map›Paper›PMID 23144455›Full record

ArticleThe Journal of biological chemistry2012

Retinoid binding properties of nucleotide binding domain 1 of the Stargardt disease-associated ATP binding cassette (ABC) transporter, ABCA4.

Esther E Biswas-Fiss, Stephanie Affet, Malissa Ha, Subhasis B Biswas

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Review
  3. Structural and Pathogenic Impacts ofInternational journal of molecular sciences · 2023
    Article
  4. Article
  5. Activation of JNK signaling promotes all-The Journal of biological chemistry · 2020
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Role of ABC transporters in lipid transport and human disease.Trends in endocrinology and metabolism: TEM · 2013
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Esther E Biswas-FissDepartment of Bioscience Technologies, Program in Biotechnology, Jefferson School of Health Professions, Thomas Jefferson University, Philadelphia, Pennsylvania 19107, USA. Esther.Biswas@jefferson.edu
Stephanie Affet
Malissa Ha
Subhasis B Biswas
Rowan University · USThomas Jefferson University · US

Funding

MOLECULAR ANALYSIS GENETIC MUTATIONS IN VISUAL DISEASESR15EY013113 · NEI · UNIVERSITY OF DELAWARE · PI BISWAS-FISS, ESTHER ELISSA · 2000 to 2014
$1.1M
NEI NIH HHS EY 013113NEI NIH HHS R15 EY013113
6 · The paper itself

Abstract

The retina-specific ATP binding cassette transporter, ABCA4 protein, is associated with a broad range of inherited macular degenerations, including Stargardt disease, autosomal recessive cone rod dystrophy, and fundus flavimaculatus. In order to understand its role in retinal transport in rod out segment discs, we have investigated the interactions of the soluble domains of ABCA4 with both 11-cis- and all-trans-retinal. Using fluorescence anisotropy-based binding analysis and recombinant polypeptides derived from the amino acid sequences of the four soluble domains of ABCA4, we demonstrated that the nucleotide binding domain 1 (NBD1) specifically bound 11-cis-retinal. Its affinity for all-trans-retinal was markedly reduced. Stargardt disease-associated mutations in this domain resulted in attenuation of 11-cis-retinal binding. Significant differences in 11-cis-retinal binding affinities were observed between NBD1 and other cytoplasmic and lumenal domains of ABCA4. The results suggest a possible role of ABCA4 and, in particular, the NBD1 domain in 11-cis-retinal binding. These results also correlate well with a recent report on the in vivo role of ABCA4 in 11-cis-retinal transport.

Indexed as

Adenosine TriphosphateAmino Acid SequenceATP-Binding Cassette TransportersHumansIsomerismKineticsMacular DegenerationMolecular Sequence DataNucleotidesProtein BindingProtein Structure, TertiaryRetinoidsSequence AlignmentABCA4 protein, humanAdenosine TriphosphateATP-Binding Cassette TransportersNucleotidesRetinoids

Identifiers

PMID23144455
PMCPMC3531725
OpenAlexW2014078875

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.