Evidence map›Paper›PMID 23144245›Full record

ArticleJournal of bacteriology2013

Characterization of BreR interaction with the bile response promoters breAB and breR in Vibrio cholerae.

Francisca A Cerda-Maira, Gabriela Kovacikova, Brooke A Jude, Karen Skorupski, Ronald K Taylor

Open access · bronzeAbstract read
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Article in Journal of bacteriology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Francisca A Cerda-MairaDepartment of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover, NH, USA.
Gabriela Kovacikova
Brooke A Jude
Karen Skorupski
Ronald K Taylor
Dartmouth College · USBard College · US

Funding

HIERARCHY WITHIN ENVIRONMENTAL REGULONSR01AI039654 · NIAID · DARTMOUTH COLLEGE · PI TAYLOR, RONALD K · 1996 to 2011
$3.3M
Hierarchy Within Environmental RegulonsR56AI039654 · NIAID · DARTMOUTH COLLEGE · PI TAYLOR, RONALD K · 2014 to 2014
$405k
NIAID NIH HHS AI039654NIAID NIH HHS R01 AI039654NIAID NIH HHS R56 AI039654
6 · The paper itself

Abstract

The Vibrio cholerae BreR protein is a transcriptional repressor of the breAB efflux system operon, which encodes proteins involved in bile resistance. In a previous study (F. A. Cerda-Maira, C. S. Ringelberg, and R. K. Taylor, J. Bacteriol. 190:7441-7452, 2008), we used gel mobility shift assays to determine that BreR binds at two independent binding sites at the breAB promoter and a single site at its own promoter. Here it is shown, by DNase I footprinting and site-directed mutagenesis, that BreR is able to bind at a distal and a proximal site in the breAB promoter. However, only one of these sites, the proximal 29-bp site, is necessary for BreR-mediated transcriptional repression of breAB expression. In addition, it was determined that BreR represses its own expression by recognizing a 28-bp site at the breR promoter. These sites comprise regions of dyad symmetry within which residues critical for BreR function could be identified. The BreR consensus sequence AANGTANAC-N(6)-GTNTACNTT overlaps the -35 region at both promoters, implying that the repression of gene expression is achieved by interfering with RNA polymerase binding at these promoters.

Indexed as

Gene Expression Regulation, BacterialPromoter Regions, GeneticBileDeoxyribonuclease IDNA, BacterialDNA FootprintingMutagenesis, Site-DirectedProtein BindingRepressor ProteinsVibrio choleraeDeoxyribonuclease IDNA, BacterialRepressor Proteins

Identifiers

PMID23144245
PMCPMC3553838
OpenAlexW2013457289

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.