Evidence map›Paper›PMID 23144189›Full record

ArticlePlant physiology2013

Identification and origin of N-linked β-D-N-acetylglucosamine monosaccharide modifications on Arabidopsis proteins.

Young-Cheon Kim, Neal Jahren, Matthew D Stone, Namrata D Udeshi, Todd W Markowski, Bruce A Witthuhn, Jeffrey Shabanowitz, Donald F Hunt, Neil E Olszewski

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

  1. Frontiers in plant science · 2024
    Article
  2. Article
  3. Comparative proteomics reveals elevated CCN2 in NGLY1-deficient cells.Biochemical and biophysical research communications · 2022
    Article
  4. Review
  5. Cracking the "Sugar Code": A Snapshot ofFrontiers in plant science · 2021
    Review
  6. Cytosolic N-GlcNAc proteins are formed by the action of endo-β-N-acetylglucosaminidase.Biochemical and biophysical research communications · 2020
    Article
  7. Article
  8. Article
  9. N-Glycopeptide Profiling in Arabidopsis Inflorescence.Molecular & cellular proteomics : MCP · 2016
    Article
  10. Article
  11. Article
  12. Article
  13. Generation and degradation of free asparagine-linked glycans.Cellular and molecular life sciences : CMLS · 2015
    Review
  14. Endo-β-N-acetylglucosaminidase forms N-GlcNAc protein aggregates during ER-associated degradation in Ngly1-defective cells.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  15. Arabidopsis ROCK1 transports UDP-GlcNAc/UDP-GalNAc and regulates ER protein quality control and cytokinin activity.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Young-Cheon KimDepartment of Plant Biology, Microbial and Plant Genomics Institute, St. Paul, Minnesota 55108, USA.
Neal Jahren
Matthew D Stone
Namrata D Udeshi
Todd W Markowski
Bruce A Witthuhn
Jeffrey Shabanowitz
Donald F Hunt
Neil E Olszewski
University of Virginia · USUniversity of Minnesota · US

Funding

PROTEIN SEQUENCING BY TANDEM MASS SPECTROMETRYR01GM037537 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI HUNT, DONALD F · 1987 to 2023
$17.8M
NIGMS NIH HHS GM37537NIGMS NIH HHS R01 GM037537
6 · The paper itself

Abstract

Many plant proteins are modified with N-linked oligosaccharides at asparagine-X-serine/threonine sites during transit through the endoplasmic reticulum and the Golgi. We have identified a number of Arabidopsis (Arabidopsis thaliana) proteins with modifications consisting of an N-linked N-acetyl-D-glucosamine monosaccharide (N-GlcNAc). Electron transfer dissociation mass spectrometry analysis of peptides bearing this modification mapped the modification to asparagine-X-serine/threonine sites on proteins that are predicted to transit through the endoplasmic reticulum and Golgi. A mass labeling method was developed and used to study N-GlcNAc modification of two thioglucoside glucohydrolases (myrosinases), TGG1 and TGG2 (for thioglucoside glucohydrolase). These myrosinases are also modified with high-mannose (Man)-type glycans. We found that N-GlcNAc and high-Man-type glycans can occur at the same site. It has been hypothesized that N-GlcNAc modifications are generated when endo-β-N-acetylglucosaminidase (ENGase) cleaves N-linked glycans. We examined the effects of mutations affecting the two known Arabidopsis ENGases on N-GlcNAc modification of myrosinase and found that modification of TGG2 was greatly reduced in one of the single mutants and absent in the double mutant. Surprisingly, N-GlcNAc modification of TGG1 was not affected in any of the mutants. These data support the hypothesis that ENGases hydrolyze high-Man glycans to produce some of the N-GlcNAc modifications but also suggest that some N-GlcNAc modifications are generated by another mechanism. Since N-GlcNAc modification was detected at only one site on each myrosinase, the production of the N-GlcNAc modification may be regulated.

Indexed as

AcetylglucosamineAmino Acid SequenceArabidopsisArabidopsis ProteinsAsparagineChromatography, AffinityCytosolEndoplasmic ReticulumEnzyme ActivationGlycoside HydrolasesGlycosylationMannosyl-Glycoprotein Endo-beta-N-AcetylglucosaminidaseMolecular ConformationPolysaccharidesProtein FoldingRecombinant ProteinsAcetylglucosamineArabidopsis ProteinsAsparagineGlycoside HydrolasesMannosyl-Glycoprotein Endo-beta-N-AcetylglucosaminidasePolysaccharidesRecombinant ProteinsSerineTGG1 protein, ArabidopsisTGG2 protein, ArabidopsisThreonine

Identifiers

PMID23144189
PMCPMC3532274
OpenAlexW2075498346

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.