Evidence map›Paper›PMID 23143594›Full record

SynthesisNature genetics2012

Identification of 15 new psoriasis susceptibility loci highlights the role of innate immunity.

Lam C Tsoi, Sarah L Spain, Jo Knight, Eva Ellinghaus, Philip E Stuart, Francesca Capon, Jun Ding, Yanming Li, Trilokraj Tejasvi, Johann E Gudjonsson and 59 more

Registry-linked trialAbstract readMeta-Analysis
In one paragraph

Synthesis in Nature genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03149900 (Exploratory Evaluation of Biomarkers Associated With Treatment Response to Cosentyx), which is not on this map. Cited by 552 papers, 13 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
552citing papers in PubMed, 13 pooled it
36.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03149900 completednot on this mapstarted 2016, after this paper: background citation

Exploratory Evaluation of Biomarkers Associated With Treatment Response to Cosentyx (Secukinumab) in Psoriasis Patients

TypeobservationalSponsorDiamant ThaciRan2016 to 2019Enrolled40ConditionsPsoriasis VulgarisArmsSecukinumab
3 · Its place in the literature

Who cites it

552 citing papers in PubMed, 13 syntheses or guidelines pooled it, 1,038 citations in OpenAlex.

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492 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

69 authors at 20 institutions in 11 countries.

Lam C TsoiDepartment of Biostatistics, Center for Statistical Genetics, University of Michigan Ann Arbor, MI, USA.
Sarah L Spain
Jo Knight
Eva Ellinghaus
Philip E Stuart
Francesca Capon
Jun Ding
Yanming Li
Trilokraj Tejasvi
Johann E Gudjonsson
Hyun M Kang
Michael H Allen
Ross McManus
Giuseppe Novelli
Lena Samuelsson
Joost Schalkwijk
Mona Ståhle
A David Burden
Catherine H Smith
Michael J Cork
Xavier Estivill
Anne M Bowcock
Gerald G Krueger
Wolfgang Weger
Jane Worthington
Rachid Tazi-Ahnini
Frank O Nestle
Adrian Hayday
Per Hoffmann
Juliane Winkelmann
Cisca Wijmenga
Cordelia Langford
Sarah Edkins
Robert Andrews
Hannah Blackburn
Amy Strange
Gavin Band
Richard D Pearson
Damjan Vukcevic
Chris C A Spencer
Panos Deloukas
Ulrich Mrowietz
Stefan Schreiber
Stephan Weidinger
Sulev Koks
Külli Kingo
Tonu Esko
Andres Metspalu
Henry W Lim
John J Voorhees
Michael Weichenthal
H Erich Wichmann
Vinod Chandran
Cheryl F Rosen
Proton Rahman
Dafna D Gladman
Christopher E M Griffiths
Andre Reis
Juha Kere
Collaborative Association Study of Psoriasis (CASP)
Genetic Analysis of Psoriasis Consortium
Psoriasis Association Genetics Extension
Wellcome Trust Case Control Consortium 2
Rajan P Nair
Andre Franke
Jonathan N W N Barker
Goncalo R Abecasis
James T Elder
Richard C Trembath
University of Michigan–Ann Arbor · USKing's College London · GBCentre for Human Genetics · GBWellcome Sanger Institute · GBUniversity of Tartu · EEKarolinska Institutet · SEManchester Academic Health Science Centre · GBToronto Western Hospital · CAUniversity of Sheffield · GBCentre for Addiction and Mental Health · CACentro de Investigación Biomédica en Red de Epidemiología y Salud Pública · ESFriedrich-Alexander-Universität Erlangen-Nürnberg · DEHelmholtz Zentrum München · DEHenry Ford Hospital · USItalian National Agency for the Evaluation of Universities and Research Institutes · ITKiel University · DEMedical University of Graz · ATMemorial University of Newfoundland · CARadboud University Nijmegen · NLSt. James's Hospital · IE

Funding

Statistical genetics of aging-related genomic and phenotypic changeZIAAG000693 · NIA · NATIONAL INSTITUTE ON AGING · PI DING, JUN · 2011 to 2025
$12.5M
Linkage analysis of familial psoriasis(Supplement)R01AR042742 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ELDER, JAMES TILFORD · 1994 to 2021
$10.1M
Genome-Wide SNP Association in PsoriasisR01AR050266 · NIAMS · WASHINGTON UNIVERSITY · PI BOWCOCK, ANNE MARY · 2007 to 2016
$5.7M
Identification of Psoriatic Arthritis Genes in the MHCR01AR050511 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ELDER, JAMES TILFORD · 2004 to 2013
$4.2M
Robust Software Tools for Variant Identification and Functional AssessmentU01HG006513 · NHGRI · UNIVERSITY OF UTAH · PI ABECASIS, GONCALO, MARTH, GABOR T · 2012 to 2015
$4.2M
Combined Analysis of Gene Expression and DNA Variation in PsoriasisR01AR054966 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ELDER, JAMES TILFORD · 2007 to 2011
$3.2M
Computational and statistical models for human geneticsR01HG007022 · NHGRI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ABECASIS, GONCALO · 2012 to 2016
$3.0M
Identification of Genetic Susceptibility in Adolescent Idiopathic ScoliosisR01HD052973 · NICHD · UT SOUTHWESTERN MEDICAL CENTER · PI WISE, CAROL A · 2008 to 2012
$2.8M
Genotyping the NPF Biobank for Psoriasis Susceptibility GenesRC1AR058315 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ELDER, JAMES TILFORD · 2009 to 2010
$993k
Role of the Psoriasis Associated IL23R Risk Variants on Th17 Biology and FunctionK08AR060802 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GUDJONSSON, JOHANN ELI · 2011 to 2015
$636k
Genetic Analysis of the TNF Pathway in PsoriasisK08AR057763 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIAO, WILSON · 2010 to 2014
$599k
Arthritis Research UK 17552CIHRDepartment of Health 557Medical Research Council G0000934Medical Research Council G0601387Medical Research Council G060I1387Medical Research Council G0700314Medical Research Council MR/J006742/1NHGRI NIH HHS HG007022NHGRI NIH HHS U01 HG006513NIAMS NIH HHS AR054966NIAMS NIH HHS K08 AR057763NIAMS NIH HHS K08 AR060802NIAMS NIH HHS R01 AR042742NIAMS NIH HHS R01 AR050266NIAMS NIH HHS R01 AR050511NIAMS NIH HHS R01 AR054966NIAMS NIH HHS RC1 AR058315NICHD NIH HHS R01 HD052973Wellcome Trust 068545/Z/02Wellcome Trust 083948/Z/07/ZWellcome Trust 085475/B/08/ZWellcome Trust 085780Wellcome Trust 090532Wellcome Trust 098439
6 · The paper itself

Abstract

To gain further insight into the genetic architecture of psoriasis, we conducted a meta-analysis of 3 genome-wide association studies (GWAS) and 2 independent data sets genotyped on the Immunochip, including 10,588 cases and 22,806 controls. We identified 15 new susceptibility loci, increasing to 36 the number associated with psoriasis in European individuals. We also identified, using conditional analyses, five independent signals within previously known loci. The newly identified loci shared with other autoimmune diseases include candidate genes with roles in regulating T-cell function (such as RUNX3, TAGAP and STAT3). Notably, they included candidate genes whose products are involved in innate host defense, including interferon-mediated antiviral responses (DDX58), macrophage activation (ZC3H12C) and nuclear factor (NF)-κB signaling (CARD14 and CARM1). These results portend a better understanding of shared and distinctive genetic determinants of immune-mediated inflammatory disorders and emphasize the importance of the skin in innate and acquired host defense.

Indexed as

Genetic LociGenetic Predisposition to DiseaseCARD Signaling Adaptor ProteinsCore Binding Factor Alpha 3 SubunitDEAD Box Protein 58DEAD-box RNA HelicasesGenome-Wide Association StudyGTPase-Activating ProteinsGuanylate CyclaseHumansImmunity, InnateMembrane ProteinsOligonucleotide Array Sequence AnalysisPolymorphism, Single NucleotidePsoriasisReceptors, ImmunologicCARD11 protein, humanCARD14 protein, humanCARD Signaling Adaptor ProteinsCore Binding Factor Alpha 3 SubunitDEAD Box Protein 58DEAD-box RNA HelicasesGTPase-Activating ProteinsGuanylate CyclaseMembrane ProteinsReceptors, ImmunologicRIGI protein, humanRunx3 protein, humanSTAT3 protein, humanSTAT3 Transcription FactorTAGAP protein, human

Identifiers

PMID23143594
PMCPMC3510312
OpenAlexW2102889851

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.