Evidence map›Paper›PMID 23143413›Full record

ArticleNature chemical biology2013

Structure and function of a unique pore-forming protein from a pathogenic acanthamoeba.

Matthias Michalek, Frank D Sönnichsen, Rainer Wechselberger, Andrew J Dingley, Chien-Wen Hung, Annika Kopp, Hans Wienk, Maren Simanski, Rosa Herbst, Inken Lorenzen and 6 more

Abstract read
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In one paragraph

Article in Nature chemical biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Novel anti-Frontiers in cellular and infection microbiology · 2024
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. The many lives of nontuberculous mycobacteria.Journal of bacteriology · 2018
    Article
  9. Environmental adaptation ofInternational journal of biological sciences · 2018
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Cytotoxic activity and degradation patterns of structural proteins by corneal isolates of Acanthamoeba spp.Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv fur klinische und experimentelle Ophthalmologie · 2015
    Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Matthias MichalekZoological Institute, Zoophysiology, Christian-Albrechts Universität zu Kiel, Kiel, Germany.
Frank D Sönnichsen
Rainer Wechselberger
Andrew J Dingley
Chien-Wen Hung
Annika Kopp
Hans Wienk
Maren Simanski
Rosa Herbst
Inken Lorenzen
Francine Marciano-Cabral
Christoph Gelhaus
Thomas Gutsmann
Andreas Tholey
Joachim Grötzinger
Matthias Leippe

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Human pathogens often produce soluble protein toxins that generate pores inside membranes, resulting in the death of target cells and tissue damage. In pathogenic amoebae, this has been exemplified with amoebapores of the enteric protozoan parasite Entamoeba histolytica. Here we characterize acanthaporin, to our knowledge the first pore-forming toxin to be described from acanthamoebae, which are free-living, bacteria-feeding, unicellular organisms that are opportunistic pathogens of increasing importance and cause severe and often fatal diseases. We isolated acanthaporin from extracts of virulent Acanthamoeba culbertsoni by tracking its pore-forming activity, molecularly cloned the gene of its precursor and recombinantly expressed the mature protein in bacteria. Acanthaporin was cytotoxic for human neuronal cells and exerted antimicrobial activity against a variety of bacterial strains by permeabilizing their membranes. The tertiary structures of acanthaporin's active monomeric form and inactive dimeric form, both solved by NMR spectroscopy, revealed a currently unknown protein fold and a pH-dependent trigger mechanism of activation.

Indexed as

AcanthamoebaAmino Acid SequenceDimerizationModels, MolecularMolecular Sequence DataProtein Structure, TertiaryProtozoan ProteinsStructure-Activity RelationshipVirulenceProtozoan Proteins

Identifiers

PMID23143413

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.