ArticleBMC systems biology2012
VANTED v2: a framework for systems biology applications.
Article in BMC systems biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers.
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93 citing papers in PubMed.
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- Transomics2cytoscape: an automated software for interpretable 2.5-dimensional visualization of trans-omic networks.NPJ systems biology and applications · 2024Article
- Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches.Frontiers in immunology · 2023Article
- Towards a hybrid user interface for the visual exploration of large biomolecular networks using virtual reality.Journal of integrative bioinformatics · 2022Article
- Ketogenic diet uncovers differential metabolic plasticity of brain cells.Science advances · 2022Article
- Unraveling metabolic patterns and molecular mechanisms underlying storability in sugar beet.BMC plant biology · 2022Article
- Design considerations for representing systems biology information with the Systems Biology Graphical Notation.Journal of integrative bioinformatics · 2022Article
- A non-targeted metabolomics analysis identifies wound-induced oxylipins inFrontiers in plant science · 2022Article
- Skotomorphogenesis exploits threonine to promote hypocotyl elongation.Quantitative plant biology · 2022Article
- Characterization of Catechol-1,2-Dioxygenase (Acdo1p) FromFrontiers in microbiology · 2022Article
- Health monitoring in birds using bio-loggers and whole blood transcriptomics.Scientific reports · 2021Article
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9 authors.
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Abstract
backgroundExperimental datasets are becoming larger and increasingly complex, spanning different data domains, thereby expanding the requirements for respective tool support for their analysis. Networks provide a basis for the integration, analysis and visualization of multi-omics experimental datasets.
resultsHere we present VANTED (version 2), a framework for systems biology applications, which comprises a comprehensive set of seven main tasks. These range from network reconstruction, data visualization, integration of various data types, network simulation to data exploration combined with a manifold support of systems biology standards for visualization and data exchange. The offered set of functionalities is instantiated by combining several tasks in order to enable users to view and explore a comprehensive dataset from different perspectives. We describe the system as well as an exemplary workflow.
conclusionsVANTED is a stand-alone framework which supports scientists during the data analysis and interpretation phase. It is available as a Java open source tool from http://www.vanted.org.
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