Evidence map›Paper›PMID 23139357›Full record

ArticleDiabetes2013

Insights into the molecular mechanism for type 2 diabetes susceptibility at the KCNQ1 locus from temporal changes in imprinting status in human islets.

Mary E Travers, Deborah J G Mackay, Marloes Dekker Nitert, Andrew P Morris, Cecilia M Lindgren, Andrew Berry, Paul R Johnson, Neil Hanley, Leif C Groop, Mark I McCarthy and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Diabetes, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed, 2 pooled it
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 2 syntheses or guidelines pooled it, 116 citations in OpenAlex.

  1. Pooled it
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  15. Syndromic forms of congenital hyperinsulinism.Frontiers in endocrinology · 2023
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12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Mary E TraversOxford Centre for Diabetes Endocrinology & Metabolism, University of Oxford, Oxford, UK.
Deborah J G Mackay
Marloes Dekker Nitert
Andrew P Morris
Cecilia M Lindgren
Andrew Berry
Paul R Johnson
Neil Hanley
Leif C Groop
Mark I McCarthy
Anna L Gloyn
Centre for Human Genetics · GBChurchill Hospital · GBLund University · SEUniversity of Manchester · GBUniversity of Oxford · GBUniversity of Southampton · GB

Funding

Medical Research Council G0700222/81696Wellcome Trust 088566Wellcome Trust 090532Wellcome Trust 095101Wellcome Trust 095101/Z/10/ZWellcome Trust 098017
6 · The paper itself

Abstract

The molecular basis of type 2 diabetes predisposition at most established susceptibility loci remains poorly understood. KCNQ1 maps within the 11p15.5 imprinted domain, a region with an established role in congenital growth phenotypes. Variants intronic to KCNQ1 influence diabetes susceptibility when maternally inherited. By use of quantitative PCR and pyrosequencing of human adult islet and fetal pancreas samples, we investigated the imprinting status of regional transcripts and aimed to determine whether type 2 diabetes risk alleles influence regional DNA methylation and gene expression. The results demonstrate that gene expression patterns differ by developmental stage. CDKN1C showed monoallelic expression in both adult and fetal tissue, whereas PHLDA2, SLC22A18, and SLC22A18AS were biallelically expressed in both tissues. Temporal changes in imprinting were observed for KCNQ1 and KCNQ1OT1, with monoallelic expression in fetal tissues and biallelic expression in adult samples. Genotype at the type 2 diabetes risk variant rs2237895 influenced methylation levels of regulatory sequence in fetal pancreas but without demonstrable effects on gene expression. We demonstrate that CDKN1C, KCNQ1, and KCNQ1OT1 are most likely to mediate diabetes susceptibility at the KCNQ1 locus and identify temporal differences in imprinting status and methylation effects, suggesting that diabetes risk effects may be mediated in early development.

Indexed as

Fetal DevelopmentGene Expression Regulation, DevelopmentalGenetic LociGenetic Predisposition to DiseasePolymorphism, Single NucleotideAdultAllelesChromosomes, Human, Pair 11Cohort StudiesCyclin-Dependent Kinase Inhibitor p57Diabetes Mellitus, Type 2DNA MethylationGenetic Association StudiesHumansIntronsIslets of LangerhansCDKN1C protein, humanCyclin-Dependent Kinase Inhibitor p57KCNQ1OT1 long non-coding RNA, humanKCNQ1 Potassium ChannelPotassium Channels, Voltage-Gated

Identifiers

PMID23139357
PMCPMC3581222
OpenAlexW2148201806

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.