Evidence map›Paper›PMID 23139077›Full record

ArticleProtein science : a publication of the Protein Society2013

Detection of drug-induced conformational change of a transmembrane protein in lipid bilayers using site-directed spin labeling.

Jessica L Thomaston, Phuong A Nguyen, Emily C Brown, Mary Alice Upshur, Jun Wang, William F DeGrado, Kathleen P Howard

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Conformation of influenza AM2 membrane protein in nanodiscs and liposomes.Biochimica et biophysica acta. Biomembranes · 2023
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Targeting the Channel Activity of Viroporins.Advances in protein chemistry and structural biology · 2016
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jessica L ThomastonDepartment of Chemistry and Biochemistry, Swarthmore College, Swarthmore, Pennsylvania 19081, USA.
Phuong A Nguyen
Emily C Brown
Mary Alice Upshur
Jun Wang
William F DeGrado
Kathleen P Howard
Swarthmore College · USUniversity of California, San Francisco · US

Funding

Structure of M2 Proton Channel from Influenza A VirusR01GM056423 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI DEGRADO, WILLIAM · 1997 to 2016
$4.5M
Adamantane Drug Binding to Membrane-Bound Influenza A M2 ProteinR15AI094483 · NIAID · SWARTHMORE COLLEGE · PI HOWARD, KATHLEEN P · 2011 to 2011
$309k
NIAID NIH HHS R15AI094483-01NIGMS NIH HHS R01 GM056423
6 · The paper itself

Abstract

As a target of antiviral drugs, the influenza A M2 protein has been the focus of numerous structural studies and has been extensively explored as a model ion channel. In this study, we capitalize on the expanding body of high-resolution structural data available for the M2 protein to design and interpret site-directed spin-labeling electron paramagnetic resonance spectroscopy experiments on drug-induced conformational changes of the M2 protein embedded in lipid bilayers. We obtained data in the presence of adamantane drugs for two different M2 constructs (M2TM 22-46 and M2TMC 23-60). M2TM peptides were spin labeled at the N-terminal end of the transmembrane domain. M2TMC peptides were spin labeled site specifically at cysteine residues substituted for amino acids within the transmembrane domain (L36, I39, I42, and L43) and the C-terminal amphipathic helix (L46, F47, F48, C50, I51, Y52, R53, F54, F55, and E56). Addition of adamantane drugs brought about significant changes in measured electron paramagnetic resonance spectroscopy environmental parameters consistent with narrowing of the transmembrane channel pore and closer packing of the C-terminal amphipathic helices.

Indexed as

Spin LabelsAdamantaneAntiviral AgentsBinding SitesElectron Spin Resonance SpectroscopyLipid BilayersProtein ConformationStructure-Activity RelationshipViral Matrix ProteinsViroporin ProteinsAdamantaneAntiviral AgentsLipid BilayersM2 protein, Influenza A virusSpin LabelsViral Matrix ProteinsViroporin Proteins

Identifiers

PMID23139077
PMCPMC3575861
OpenAlexW2095515290

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.