Evidence map›Paper›PMID 23136372›Full record

ArticleThe Plant cell2012

Crystal structure of an indole-3-acetic acid amido synthetase from grapevine involved in auxin homeostasis.

Thomas S Peat, Christine Böttcher, Janet Newman, Del Lucent, Nathan Cowieson, Christopher Davies

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 101 citations in OpenAlex.

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  15. Chemical Biology in Auxin Research.Cold Spring Harbor perspectives in biology · 2021
    Review
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  19. Article
  20. Auxin-Induced Adventitious Root Formation in Nodal Cuttings ofInternational journal of molecular sciences · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Thomas S PeatThe Commonwealth Scientific and Industrial Research Organization Materials, Science and Engineering, Parkville, Victoria 3052, Australia.
Christine Böttcher
Janet Newman
Del Lucent
Nathan Cowieson
Christopher Davies
Commonwealth Scientific and Industrial Research Organisation · AUPlant Industry · AUAustralian Synchrotron · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Auxins are important for plant growth and development, including the control of fruit ripening. Conjugation to amino acids by indole-3-acetic acid (IAA)-amido synthetases is an important part of auxin homeostasis. The structure of the auxin-conjugating Gretchen Hagen3-1 (GH3-1) enzyme from grapevine (Vitis vinifera), in complex with an inhibitor (adenosine-5'-[2-(1H-indol-3-yl)ethyl]phosphate), is presented. Comparison with a previously published benzoate-conjugating enzyme from Arabidopsis thaliana indicates that grapevine GH3-1 has a highly similar domain structure and also undergoes a large conformational change during catalysis. Mutational analyses and structural comparisons with other proteins have identified residues likely to be involved in acyl group, amino acid, and ATP substrate binding. Vv GH3-1 is a monomer in solution and requires magnesium ions solely for the adenlyation reaction. Modeling of IAA and two synthetic auxins, benzothiazole-2-oxyacetic acid (BTOA) and 1-naphthaleneacetic acid (NAA), into the active site indicates that NAA and BTOA are likely to be poor substrates for this enzyme, confirming previous enzyme kinetic studies. This suggests a reason for the increased effectiveness of NAA and BTOA as auxins in planta and provides a tool for designing new and effective auxins.

Indexed as

Amino AcidsArabidopsisCrystallography, X-RayEnzyme InhibitorsFruitGene Expression Regulation, PlantHomeostasisIndoleacetic AcidsKineticsLigasesModels, MolecularMutagenesis, Site-DirectedPlant Growth RegulatorsPlant ProteinsProtein BindingProtein ConformationAmino AcidsEnzyme Inhibitorsindoleacetic acidIndoleacetic AcidsLigasesPlant Growth RegulatorsPlant Proteins

Identifiers

PMID23136372
PMCPMC3531850
OpenAlexW2168241205

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.