Evidence map›Paper›PMID 23133353›Full record

ArticlePLoS computational biology2012

Evolution of associative learning in chemical networks.

Simon McGregor, Vera Vasas, Phil Husbands, Chrisantha Fernando

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. The "plant neurobiology" revolution.Plant signaling & behavior · 2024
    Review
  3. Article
  4. Review
  5. A reaction network scheme for hidden Markov model parameter learning.Journal of the Royal Society, Interface · 2023
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Towards the Idea of Molecular Brains.International journal of molecular sciences · 2021
    Review
  13. Article
  14. Valuing what happens: a biogenic approach to valence and (potentially) affect.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
  15. Adaptive behaviour and learning in slime moulds: the role of oscillations.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Article
  16. Review
  17. Article
  18. Article
  19. Memory inception and preservation in slime moulds: the quest for a common mechanism.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Simon McGregorDepartment of Informatics, University of Sussex, Falmer, Brighton, United Kingdom.
Vera Vasas
Phil Husbands
Chrisantha Fernando
University of Sussex · GBQueen Mary University of London · GBUniversitat Autònoma de Barcelona · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Organisms that can learn about their environment and modify their behaviour appropriately during their lifetime are more likely to survive and reproduce than organisms that do not. While associative learning - the ability to detect correlated features of the environment - has been studied extensively in nervous systems, where the underlying mechanisms are reasonably well understood, mechanisms within single cells that could allow associative learning have received little attention. Here, using in silico evolution of chemical networks, we show that there exists a diversity of remarkably simple and plausible chemical solutions to the associative learning problem, the simplest of which uses only one core chemical reaction. We then asked to what extent a linear combination of chemical concentrations in the network could approximate the ideal Bayesian posterior of an environment given the stimulus history so far? This Bayesian analysis revealed the 'memory traces' of the chemical network. The implication of this paper is that there is little reason to believe that a lack of suitable phenotypic variation would prevent associative learning from evolving in cell signalling, metabolic, gene regulatory, or a mixture of these networks in cells.

Indexed as

Evolution, MolecularModels, ChemicalBayes TheoremBiochemical PhenomenaComputational BiologyComputer SimulationLogistic ModelsMetabolism

Identifiers

PMID23133353
PMCPMC3486861
OpenAlexW2135461516

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.