Evidence map›Paper›PMID 23131896›Full record

ArticlePlant molecular biology2013

Suppression of CCR impacts metabolite profile and cell wall composition in Pinus radiata tracheary elements.

Armin Wagner, Yuki Tobimatsu, Geert Goeminne, Lorelle Phillips, Heather Flint, Diane Steward, Kirk Torr, Lloyd Donaldson, Wout Boerjan, John Ralph

Abstract read
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In one paragraph

Article in Plant molecular biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Rice Cinnamoyl CoA Reductase-like GenePlants (Basel, Switzerland) · 2025
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Lignin Engineering in Forest Trees.Frontiers in plant science · 2019
    Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Syringyl lignin production in conifers: Proof of concept in a Pine tracheary element system.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Armin WagnerScion, Private Bag 3020, Rotorua, New Zealand. armin.wagner@scionresearch.com
Yuki Tobimatsu
Geert Goeminne
Lorelle Phillips
Heather Flint
Diane Steward
Kirk Torr
Lloyd Donaldson
Wout Boerjan
John Ralph
Scion · NZVIB-UGent Center for Plant Systems Biology · BEGreat Lakes Bioenergy Research Center · USUniversity of Wisconsin–Madison · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Suppression of the lignin-related gene cinnamoyl-CoA reductase (CCR) in the Pinus radiata tracheary element (TE) system impacted both the metabolite profile and the cell wall matrix in CCR-RNAi lines. UPLC-MS/MS-based metabolite profiling identified elevated levels of p-coumaroyl hexose, caffeic acid hexoside and ferulic acid hexoside in CCR-RNAi lines, indicating a redirection of metabolite flow within phenylpropanoid metabolism. Dilignols derived from coniferyl alcohol such as G(8-5)G, G(8-O-4)G and isodihydrodehydrodiconiferyl alcohol (IDDDC) were substantially depleted, providing evidence for CCR's involvement in coniferyl alcohol biosynthesis. Severe CCR suppression almost halved lignin content in TEs based on a depletion of both H-type and G-type lignin, providing evidence for CCR's involvement in the biosynthesis of both lignin types. 2D-NMR studies revealed minor changes in the H:G-ratio and consequently a largely unchanged interunit linkage distribution in the lignin polymer. However, unusual cell wall components including ferulate and unsaturated fatty acids were identified in TEs by thioacidolysis, pyrolysis-GC/MS and/or 2D-NMR in CCR-RNAi lines, providing new insights into the consequences of CCR suppression in pine. Interestingly, CCR suppression substantially promoted pyrolytic breakdown of cell wall polysaccharides, a phenotype most likely caused by the incorporation of acidic compounds into the cell wall matrix in CCR-RNAi lines.

Indexed as

Aldehyde OxidoreductasesAmino Acid SequenceBase SequenceCell WallDNA, PlantGenes, PlantLigninMetabolomeMolecular Sequence DataMonosaccharidesNuclear Magnetic Resonance, BiomolecularPinusPlant ProteinsPlants, Genetically ModifiedRNA InterferenceSequence Homology, Amino AcidAldehyde Oxidoreductasescinnamoyl CoA reductaseDNA, PlantLigninMonosaccharidesPlant Proteins

Identifiers

PMID23131896
OpenAlexW2081365278

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.