Evidence map›Paper›PMID 23125351›Full record

ArticleEukaryotic cell2013

Circadian activation of the mitogen-activated protein kinase MAK-1 facilitates rhythms in clock-controlled genes in Neurospora crassa.

Lindsay D Bennett, Phillip Beremand, Terry L Thomas, Deborah Bell-Pedersen

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 58 citations in OpenAlex.

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  14. Principles of the animal molecular clock learned from Neurospora.The European journal of neuroscience · 2020
    Review
  15. Review
  16. ENCORE: A Visualization Tool for Insight into Circadian Omics.ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Lindsay D BennettDepartment of Biology, Texas A&M University, College Station, Texas, USA.
Phillip Beremand
Terry L Thomas
Deborah Bell-Pedersen
Texas A&M University · US

Funding

Tools for Functional Analysis and Cell BiologyP01GM068087 · NIGMS · DARTMOUTH COLLEGE · PI DUNLAP, JAY C. · 2004 to 2013
$19.3M
The Circadian Clock in the Context of the Cyanobacterial CellP01NS039546 · NINDS · TEXAS A&M UNIVERSITY SYSTEM · PI THOMAS, TERRY L · 2000 to 2010
$10.6M
Molecular Genetic Analysis of Fungal Circadian RythmsR01GM058529 · NIGMS · TEXAS A&M UNIVERSITY SYSTEM · PI BELL-PEDERSEN, DEBORAH · 1999 to 2017
$4.6M
NIGMS NIH HHS GM58529NIGMS NIH HHS P01 GM068087NIGMS NIH HHS R01 GM058529NINDS NIH HHS P01 NS039546NINDS NIH HHS P01 NS39546
6 · The paper itself

Abstract

The circadian clock regulates the expression of many genes involved in a wide range of biological functions through output pathways such as mitogen-activated protein kinase (MAPK) pathways. We demonstrate here that the clock regulates the phosphorylation, and thus activation, of the MAPKs MAK-1 and MAK-2 in the filamentous fungus Neurospora crassa. In this study, we identified genetic targets of the MAK-1 pathway, which is homologous to the cell wall integrity pathway in Saccharomyces cerevisiae and the extracellular signal-regulated kinase 1/2 (ERK1/2) pathway in mammals. When MAK-1 was deleted from Neurospora cells, vegetative growth was reduced and the transcript levels for over 500 genes were affected, with significant enrichment for genes involved in protein synthesis, biogenesis of cellular components, metabolism, energy production, and transcription. Additionally, of the ~500 genes affected by the disruption of MAK-1, more than 25% were previously identified as putative clock-controlled genes. We show that MAK-1 is necessary for robust rhythms of two morning-specific genes, i.e., ccg-1 and the mitochondrial phosphate carrier protein gene NCU07465. Additionally, we show clock regulation of a predicted chitin synthase gene, NCU04352, whose rhythmic accumulation is also dependent upon MAK-1. Together, these data establish a role for the MAK-1 pathway as an output pathway of the circadian clock and suggest a link between rhythmic MAK-1 activity and circadian control of cellular growth.

Indexed as

Gene Expression Regulation, FungalCell Cycle ProteinsChitin SynthaseCircadian ClocksCircadian RhythmEnzyme ActivationFungal ProteinsGene Expression Regulation, EnzymologicMAP Kinase Signaling SystemMitochondrial ProteinsMitogen-Activated Protein KinasesNeurospora crassaOligonucleotide Array Sequence AnalysisPhosphorylationProtein Processing, Post-TranslationalTranscriptomeCell Cycle ProteinsChitin SynthaseFungal ProteinsMitochondrial ProteinsMitogen-Activated Protein Kinases

Identifiers

PMID23125351
PMCPMC3535850
OpenAlexW2141289321

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.