Evidence map›Paper›PMID 23124848›Full record

ArticleArthritis and rheumatism2013

Brief Report: Single-nucleotide polymorphisms in VKORC1 are risk factors for systemic lupus erythematosus in Asians.

Rachel Kaiser, Kimberly E Taylor, Yun Deng, Jian Zhao, Yonghong Li, Joanne Nititham, Monica Chang, Joseph Catanese, Ann B Begovich, Elizabeth E Brown and 24 more

Open access · greenAbstract read
In one paragraph

Article in Arthritis and rheumatism, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Observational
  3. Article
  4. Clinical perspectives on lupus genetics: advances and opportunities.Rheumatic diseases clinics of North America · 2014
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors at 17 institutions in 10 countries.

Rachel KaiserUniversity of California, San Francisco, CA 94143, USA.
Kimberly E Taylor
Yun Deng
Jian Zhao
Yonghong Li
Joanne Nititham
Monica Chang
Joseph Catanese
Ann B Begovich
Elizabeth E Brown
Jeffrey C Edberg
Gerald McGwin
Graciela S Alarcón
Rosalind Ramsey-Goldman
John D Reveille
Luis M Vila
Michelle Petri
Robert P Kimberly
Xuebing Feng
Lingyun Sun
Nan Shen
Wei Li
Jian-Xin Lu
Edward K Wakeland
Quan-Zhen Li
Wanling Yang
Yu-Lung Lau
Fei-Lan Liu
Deh-Ming Chang
Chack-Yung Yu
Yeong W Song
Betty P Tsao
Lindsey A Criswell
Hwee Siew Howe and the Tan Tock Seng Hospital Systemic Lupus Erythematosus Study Group
University of Alabama at Birmingham · USUniversity of California, San Francisco · USUniversity of California, Los Angeles · USMinistry of Education of the People's Republic of China · CNNanjing University · CNThe University of Texas Southwestern Medical Center · USUniversity of Hong Kong · HKJohns Hopkins University · USNational Defense Medical Center · TWNorthwestern University · USPost Graduate Medical Institute · PKRoche (Switzerland) · CHShanghai Jiao Tong University · CNTan Tock Seng Hospital · SGThe Ohio State University · USThe University of Texas Health Science Center at Houston · USUniversity of Puerto Rico System · PR

Funding

ZD1839 FOR MALIGNANT ASTROCYTOMA OR GLIOBLASTOMA AND MENINGIOMAM01RR000079 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KESSLER, DAVID A · 1985 to 2006
$26.0M
MULTIDISCIPLINARY CLINICAL AND TRANSLATIONAL SCIENCE (MCTS) PROGRAM (UL1)UL1RR025741 · NCRR · NORTHWESTERN UNIVERSITY AT CHICAGO · PI GREENLAND, PHILIP · 2008 to 2011
$24.7M
UAB CENTER FOR CLINICAL AND TRANSLATIONAL SCIENCE (CCTS) UL1: BPCAUL1RR025777 · NCRR · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI GUAY-WOODFORD, LISA MARIE · 2008 to 2011
$22.3M
Program Project in the Genetics of SLEP01AR049084 · NIAMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KIMBERLY, ROBERT P. · 2002 to 2012
$12.7M
The Interplay of Sociodemographic and Genetic Factors in SLE Health DisparitiesP60AR053308 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KATZ, PATRICIA P · 2006 to 2016
$11.8M
Sex Related Determinants Of Pain In FibromyalgiaP60AR048095 · NIAMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI ARNETT, DONNA K · 2002 to 2012
$11.7M
Study of Lupus Vascular and Bone Longterm EndpointsP60AR048098 · NIAMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI DUNLOP, DOROTHY D. · 2002 to 2011
$11.4M
Lupus CohortR01AR043727 · NIAMS · JOHNS HOPKINS UNIVERSITY · PI PETRI, MICHELLE A · 1997 to 2015
$8.2M
CHROMOSOME REGIONS LINKED TO SLE IN MULTIPLEX FAMILIESR01AR043814 · NIAMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TSAO, BETTY P · 1997 to 2012
$5.7M
SUPERANTIGEN INTERACTIONS WITH MHC CLASS II ANTIGENSP60AR030692 · NIAMS · NORTHWESTERN UNIVERSITY · PI POPE, RICHARD M. · 1986 to 2001
$2.1M
TESTING SLE CANDIDATE LOCI USING CASES AND THEIR PARENTSR01AR044804 · NIAMS · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI CRISWELL, LINDSEY ANN · 1999 to 2003
$1.1M
PATIENT-ORIENTED RESEARCH: SYSTEMIC LUPUS ERYTHEMATOSUSK24AR002138 · NIAMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI RAMSEY-GOLDMAN, ROSALIND · 2000 to 2009
$1.0M
NCRR NIH HHS 5-M01-RR-00079NCRR NIH HHS 5UL1-RR-025777NCRR NIH HHS M01 RR000079NCRR NIH HHS UL-1-RR-025741NCRR NIH HHS UL1 RR025741NCRR NIH HHS UL1 RR025777NIAMS NIH HHS AR-43727NIAMS NIH HHS K24 AR002138NIAMS NIH HHS K24-AR-002138NIAMS NIH HHS K24 AR002175NIAMS NIH HHS K24-AR-02175NIAMS NIH HHS P01 AR049084NIAMS NIH HHS P01-AR-049084NIAMS NIH HHS P01-AR-49084NIAMS NIH HHS P60-2-AR-30692NIAMS NIH HHS P60 AR030692NIAMS NIH HHS P60 AR048095NIAMS NIH HHS P60-AR-048095NIAMS NIH HHS P60 AR048098NIAMS NIH HHS P60 AR053308NIAMS NIH HHS P60-AR-053308NIAMS NIH HHS R01 AR043727NIAMS NIH HHS R01 AR043814NIAMS NIH HHS R01-AR-043814NIAMS NIH HHS R01 AR044804NIAMS NIH HHS R01-AR-44804
6 · The paper itself

Abstract

objectiveThe increased risk of thrombosis in systemic lupus erythematosus (SLE) may be partially explained by interrelated genetic pathways for thrombosis and SLE. The present study was undertaken to investigate whether 33 established and novel single-nucleotide polymorphisms (SNPs) in 20 genes involved in hemostasis pathways that have been associated with deep venous thrombosis (DVT) in the general population are risk factors for SLE among Asian subjects.

methodsPatients in the discovery cohort were enrolled in 1 of 2 North American SLE cohorts. Patients in the replication cohort were enrolled in 1 of 4 Asian or 2 North American cohorts. We first genotyped 263 Asian patients with SLE and 357 healthy Asian control subjects for 33 SNPs in the discovery phase, and then genotyped 5 SNPs in up to an additional 1,496 patients and 993 controls in the replication phase. Patients were compared to controls for bivariate association with minor alleles. Principal components analysis was used to control for intra-Asian ancestry in the replication cohort.

resultsTwo genetic variants in the gene VKORC1 were highly significant in both the discovery and replication cohorts: rs9934438 (in the discovery cohort, odds ratio [OR] 2.45, P=2×10(-9); in the replication cohort, OR 1.54, P=4×10(-6)) and rs9923231 (in the discovery cohort, OR 2.40, P=6×10(-9); in the replication cohort, OR 1.53, P=5×10(-6)). These associations were significant in the replication cohort after adjustment for intra-Asian ancestry: for rs9934438, OR 1.34, P=0.0029; for rs9923231, OR 1.34, P=0.0032.

conclusionGenetic variants in VKORC1, which are involved in vitamin K reduction and associated with DVT, correlate with SLE development in Asian subjects. These results suggest that there may be intersecting genetic pathways for the development of SLE and thrombosis.

Indexed as

AdultAsian PeopleCase-Control StudiesFemaleGenetic Predisposition to DiseaseGenotypeHemostasisHumansLupus Erythematosus, SystemicMaleMiddle AgedMixed Function OxygenasesPolymorphism, Single NucleotideRisk FactorsVenous ThrombosisVitamin K Epoxide ReductasesMixed Function OxygenasesVitamin K Epoxide ReductasesVKORC1 protein, human

Identifiers

PMID23124848
PMCPMC3670944
OpenAlexW1982950986

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