ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2013
Phenotypic diversity and association mapping for fruit quality traits in cultivated tomato and related species.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 1 of them a synthesis that pooled it.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
37 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Meta-analysis of genome-wide association studies provides insights into genetic control of tomato flavor.Nature communications · 2019Pooled it
- Research on multi-trait genome association study method based on Shannon information entropy.BMC bioinformatics · 2026Article
- Haplotype-based genome-wide association study uncovers QTL for fruit-related traits in the 287 tomato accessions.BMC plant biology · 2026Article
- New QTLs involved in the control of stigma position in tomato.BMC plant biology · 2025Article
- Genetic diversity, population structure and marker-trait associations in Indian kale (Heliyon · 2024Article
- Prediction accuracy of genomic estimated breeding values for fruit traits in cultivated tomato (Solanum lycopersicum L.).BMC plant biology · 2024Article
- The INRAE Centre for Vegetable Germplasm: Geographically and Phenotypically Diverse Collections and Their Use in Genetics and Plant Breeding.Plants (Basel, Switzerland) · 2022Article
- Genome-wide association study identifies QTL for eight fruit traits in cultivated tomato (Solanum lycopersicum L.).Horticulture research · 2021Article
- Genome-Wide SNP Markers for Genotypic and Phenotypic Differentiation of Melon (International journal of molecular sciences · 2021Article
- Article
- Article
- Within- and cross-species predictions of plant specialized metabolism genes using transfer learning.In silico plants · 2020Article
- ddRAD sequencing-based genotyping for population structure analysis in cultivated tomato provides new insights into the genomic diversity of Mediterranean 'da serbo' type long shelf-life germplasm.Horticulture research · 2020Article
- Genome-Wide Association Analysis of Mucilage and Hull Content in Flax (International journal of molecular sciences · 2018Article
- Association Mapping for Important Agronomic Traits in Safflower (Frontiers in plant science · 2018Article
- Association Study Reveals Novel Genes Related to Yield and Quality of Fruit in Cape Gooseberry (Frontiers in plant science · 2018Article
- Association and Genetic Identification of Loci for Four Fruit Traits in Tomato Using InDel Markers.Frontiers in plant science · 2017Article
- Association mapping reveals the genetic architecture of tomato response to water deficit: focus on major fruit quality traits.Journal of experimental botany · 2016Article
- Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation.PLoS biology · 2016Article
- A simulation-based breeding design that uses whole-genome prediction in tomato.Scientific reports · 2016Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
10 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Association mapping has been proposed as an efficient approach to assist in the identification of the molecular basis of agronomical traits in plants. For this purpose, we analyzed the phenotypic and genetic diversity of a large collection of tomato accessions including 44 heirloom and vintage cultivars (Solanum lycopersicum), 127 S. lycopersicum var. cerasiforme (cherry tomato) and 17 Solanum pimpinellifolium accessions. The accessions were genotyped using a SNPlex™ assay of 192 SNPs, among which 121 were informative for subsequent analysis. Linkage disequilibrium (LD) of pairwise loci and population structure were analyzed, and the association analysis between SNP genotypes and ten fruit quality traits was performed using a mixed linear model. High level of LD was found in the collection at the whole genome level. It was lower when considering only the 127 S. lycopersicum var. cerasiforme accessions. Genetic structure analysis showed that the population was structured into two main groups, corresponding to cultivated and wild types and many intermediates. The number of associations detected per trait varied, according to the way the structure was taken into account, with 0-41 associations detected per trait in the whole collection and a maximum of four associations in the S. lycopersicum var. cerasiforme accessions. A total of 40 associations (30 %) were co-localized with previously identified quantitative trait loci. This study thus showed the potential and limits of using association mapping in tomato populations.
Indexed as
Identifiers
23124430What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.