Evidence map›Paper›PMID 23123515›Full record

ArticleBiochimica et biophysica acta2013

Role of the -PEWY-glutamate in catalysis at the Q(o)-site of the Cyt bc(1) complex.

Doreen Victoria, Rodney Burton, Antony R Crofts

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Review
  2. Article
  3. Flexibility and Hydration of the QJournal of chemical information and modeling · 2025
    Article
  4. The cytochrome bPhotosynthesis research · 2024
    Review
  5. Cryo-EM structure of the four-subunitProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Review
  7. Article
  8. The High-Spin HemeFrontiers in chemistry · 2021
    Article
  9. Universal free-energy landscape produces efficient and reversible electron bifurcation.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  10. Modelling mitochondrial ROS production by the respiratory chain.Cellular and molecular life sciences : CMLS · 2020
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Doreen VictoriaDepartment of Biochemistry, University of Illinois, Urbana, IL 61801, USA.
Rodney Burton
Antony R Crofts

Funding

MOLECULAR ARCHITECTURE OF UQH2: CYTC2 OXIDOREDUCTASER01GM035438 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI CROFTS, ANTONY R. · 1986 to 2011
$3.3M
Structure of reaction intermediates in the bc1 complexR01GM062954 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI DIKANOV, SERGEI A · 2002 to 2010
$2.2M
NIGMS NIH HHS R01 GM035438NIGMS NIH HHS R01 GM062954NIGMS NIH HHS R01 GM62954
6 · The paper itself

Abstract

We re-examine the pH dependence of partial processes of ubihydroquinone (QH(2)) turnover in Glu-295 mutants in Rhodobacter sphaeroides to clarify the mechanistic role. In more crippled mutants, the bell-shaped pH profile of wildtype was replaced by dependence on a single pK at ~8.5 favoring electron transfer. Loss of the pK at 6.5 reflects a change in the rate-limiting step from the first to the second electron transfer. Over the range of pH 6-8, no major pH dependence of formation of the initial reaction complex was seen, and the rates of bypass reactions were similar to the wildtype. Occupancy of the Q(o)-site by semiquinone (SQ) was similar in the wildtype and the Glu→Trp mutant. Since heme b(L) is initially oxidized in the latter, the bifurcated reaction can still occur, allowing estimation of an empirical rate constant <10(3)s(-1) for reduction of heme b(L) by SQ from the domain distal from heme b(L), a value 1000-fold smaller than that expected from distance. If the pK ~8.5 in mutant strains is due to deprotonation of the neutral semiquinone, with Q(•-) as electron donor to heme b(L), then in wildtype this low value would preclude mechanisms for normal flux in which semiquinone is constrained to this domain. A kinetic model in which Glu-295 catalyzes H(+) transfer from QH•, and delivery of the H(+) to exit channel(s) by rotational displacement, and facilitates rapid electron transfer from SQ to heme b(L) by allowing Q(•-) to move closer to the heme, accounts well for the observations.

Indexed as

BiocatalysisAntimycin AElectron Transport Complex IIIGlutamic AcidHemeHydrogen-Ion ConcentrationHydroquinonesOxidation-ReductionProtonsantimycinAntimycin AElectron Transport Complex IIIGlutamic AcidHemeHydroquinonesProtons

Identifiers

PMID23123515
PMCPMC4059559

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.