Evidence map›Paper›PMID 23123450›Full record

ArticlePlant signaling & behavior2013

In vivo imaging and quantitative monitoring of autophagic flux in tobacco BY-2 cells.

Shigeru Hanamata, Takamitsu Kurusu, Masaaki Okada, Akiko Suda, Koki Kawamura, Emi Tsukada, Kazuyuki Kuchitsu

Abstract read
In one paragraph

Article in Plant signaling & behavior, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. S-Nitrosylated Proteins Involved in Autophagy inLife (Basel, Switzerland) · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Shigeru HanamataDepartment of Applied Biological Science; Tokyo University of Science; Noda, Chiba, Japan.
Takamitsu KurusuDepartment of Applied Biological Science; Tokyo University of Science; Noda, Chiba, Japan; Research Institute for Science and Technology; Tokyo University of Science; Noda, Chiba, Japan.
Masaaki OkadaDepartment of Applied Biological Science; Tokyo University of Science; Noda, Chiba, Japan.
Akiko SudaDepartment of Applied Biological Science; Tokyo University of Science; Noda, Chiba, Japan.
Koki KawamuraDepartment of Applied Biological Science; Tokyo University of Science; Noda, Chiba, Japan.
Emi TsukadaDepartment of Applied Biological Science; Tokyo University of Science; Noda, Chiba, Japan.
Kazuyuki KuchitsuDepartment of Applied Biological Science; Tokyo University of Science; Noda, Chiba, Japan; Research Institute for Science and Technology; Tokyo University of Science; Noda, Chiba, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Autophagy has been shown to play essential roles in the growth, development and survival of eukaryotic cells. However, simple methods for quantification and visualization of autophagic flux remain to be developed in living plant cells. Here, we analyzed the autophagic flux in transgenic tobacco BY-2 cell lines expressing fluorescence-tagged NtATG8a as a marker for autophagosome formation. Under sucrose-starved conditions, the number of punctate signals of YFP-NtATG8a increased, and the fluorescence intensity of the cytoplasm and nucleoplasm decreased. Conversely, these changes were not observed in BY-2 cells expressing a C-terminal glycine deletion mutant of the NtATG8a protein (NtATG8aΔG). To monitor the autophagic flux more easily, we generated a transgenic BY-2 cell line expressing NtATG8a fused to a pH-sensitive fluorescent tag, a tandem fusion of the acid-insensitive RFP and the acid-sensitive YFP. In sucrose-rich conditions, both fluorescent signals were detected in the cytoplasm and only weakly in the vacuole. In contrast, under sucrose-starved conditions, the fluorescence intensity of the cytoplasm decreased, and the RFP signal clearly increased in the vacuole, corresponding to the fusion of the autophagosome to the vacuole and translocation of ATG8 from the cytoplasm to the vacuole. Moreover, we introduce a novel simple easy way to monitor the autophagic flux non-invasively by only measuring the ratio of fluorescence of RFP and YFP in the cell suspension using a fluorescent image analyzer without microscopy. The present in vivo quantitative monitoring system for the autophagic flux offers a powerful tool for determining the physiological functions and molecular mechanisms of plant autophagy induced by environmental stimuli.

Indexed as

AutophagyCytoplasmPhagosomesVacuolesCell LineFluorescenceNicotianaPlant CellsPlant ProteinsPlants, Genetically ModifiedRecombinant Fusion ProteinsPlant ProteinsRecombinant Fusion Proteinsautophagosomeautophagyautophagy-related protein 8 (ATG8)in vivo quantitative imagingtobacco bright yellow-2 (BY-2) suspension-cultured cells

Identifiers

PMID23123450
PMCPMC3745557

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.