Evidence map›Paper›PMID 23119071›Full record

ArticlePloS one2012

C. difficile 630Δerm Spo0A regulates sporulation, but does not contribute to toxin production, by direct high-affinity binding to target DNA.

Katharina E Rosenbusch, Dennis Bakker, Ed J Kuijper, Wiep Klaas Smits

Abstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Clostridioides difficile Sporulation.Advances in experimental medicine and biology · 2024
    Review
  6. Identification of DraRS inJournal of bacteriology · 2023
    Article
  7. Article
  8. The RgaS-RgaR two-component system promotesbioRxiv : the preprint server for biology · 2023
    Article
  9. Article
  10. Regulatory transcription factors ofCritical reviews in microbiology · 2023
    Review
  11. Article
  12. Emerging microbes & infections · 2022
    Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Regulation of Clostridioides difficile toxin production.Current opinion in microbiology · 2022
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Katharina E RosenbuschDepartment of Medical Microbiology, Leiden University Medical Center, Leiden, The Netherlands.
Dennis Bakker
Ed J Kuijper
Wiep Klaas Smits

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clostridium difficile is a Gram positive, anaerobic bacterium that can form highly resistant endospores. The bacterium is the causative agent of C. difficile infection (CDI), for which the symptoms can range from a mild diarrhea to potentially fatal pseudomembranous colitis and toxic megacolon. Endospore formation in Firmicutes, including C. difficile, is governed by the key regulator for sporulation, Spo0A. In Bacillus subtilis, this transcription factor is also directly or indirectly involved in various other cellular processes. Here, we report that C. difficile Spo0A shows a high degree of similarity to the well characterized B. subtilis protein and recognizes a similar binding sequence. We find that the laboratory strain C. difficile 630Δerm contains an 18bp-duplication near the DNA-binding domain compared to its ancestral strain 630. In vitro binding assays using purified C-terminal DNA binding domain of the C. difficile Spo0A protein demonstrate direct binding to DNA upstream of spo0A and sigH, early sporulation genes and several other putative targets. In vitro binding assays suggest that the gene encoding the major clostridial toxin TcdB may be a direct target of Spo0A, but supernatant derived from a spo0A negative strain was no less toxic towards Vero cells than that obtained from a wild type strain, in contrast to previous reports. These results identify for the first time direct (putative) targets of the Spo0A protein in C. difficile and make a positive effect of Spo0A on production of the large clostridial toxins unlikely.

Indexed as

AnimalsBacterial ProteinsBacterial ToxinsBinding SitesBlotting, WesternChlorocebus aethiopsClostridioides difficileDNA, BacterialElectrophoretic Mobility Shift AssayMolecular Sequence DataPromoter Regions, GeneticProtein BindingSequence Analysis, DNASigma FactorSpores, BacterialTranscription FactorsBacterial ProteinsBacterial ToxinsDNA, BacterialSigH protein, bacteriaSigma FactortoxB protein, Clostridium difficileTranscription Factors

Identifiers

PMID23119071
PMCPMC3485338

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.