Evidence map›Paper›PMID 23118940›Full record

ArticlePloS one2012

Functional and transcriptome analysis reveals an acclimatization strategy for abiotic stress tolerance mediated by Arabidopsis NF-YA family members.

Marco Antonio Leyva-González, Enrique Ibarra-Laclette, Alfredo Cruz-Ramírez, Luis Herrera-Estrella

Abstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Plant signaling & behavior · 2026
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  3. Genome-Wide Identification of theLife (Basel, Switzerland) · 2026
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  5. GM crops & food · 2025
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  6. Comprehensive Analysis ofPlants (Basel, Switzerland) · 2025
    Article
  7. Article
  8. Article
  9. Genome-Wide Identification and Expression Analysis ofInternational journal of molecular sciences · 2024
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  10. Article
  11. Review
  12. Article
  13. Article
  14. Nuclear factor Y-A3b binds to theHorticulture research · 2024
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article

37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Marco Antonio Leyva-GonzálezLaboratorio Nacional de Genómica para la Biodiversidad (LANGEBIO), Centro de Investigación y Estudios Avanzados Irapuato, Irapuato, Guanajuato, México.
Enrique Ibarra-Laclette
Alfredo Cruz-Ramírez
Luis Herrera-Estrella

Funding

Howard Hughes Medical Institute 55005946
6 · The paper itself

Abstract

Nuclear Factor Y (NF-Y) is a heterotrimeric complex formed by NF-YA/NF-YB/NF-YC subunits that binds to the CCAAT-box in eukaryotic promoters. In contrast to other organisms, in which a single gene encodes each subunit, in plants gene families of over 10 members encode each of the subunits. Here we report that five members of the Arabidopsis thaliana NF-YA family are strongly induced by several stress conditions via transcriptional and miR169-related post-transcriptional mechanisms. Overexpression of NF-YA2, 7 and 10 resulted in dwarf late-senescent plants with enhanced tolerance to several types of abiotic stress. These phenotypes are related to alterations in sucrose/starch balance and cell elongation observed in NF-YA overexpressing plants. The use of transcriptomic analysis of transgenic plants that express miR169-resistant versions of NF-YA2, 3, 7, and 10 under an estradiol inducible system, as well as a dominant-repressor version of NF-YA2 revealed a set of genes, whose promoters are enriched in NF-Y binding sites (CCAAT-box) and that may be directly regulated by the NF-Y complex. This analysis also suggests that NF-YAs could participate in modulating gene regulation through positive and negative mechanisms. We propose a model in which the increase in NF-YA transcript levels in response to abiotic stress is part of an adaptive response to adverse environmental conditions in which a reduction in plant growth rate plays a key role.

Indexed as

TranscriptomeAcclimatizationArabidopsisArabidopsis ProteinsCCAAT-Binding FactorGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantMicroRNAsOligonucleotide Array Sequence AnalysisPhenotypePhosphatesPlants, Genetically ModifiedPromoter Regions, GeneticProtein SubunitsSeedlingsArabidopsis ProteinsCCAAT-Binding FactorMicroRNAsNF-YA2 protein, ArabidopsisPhosphatesProtein Subunits

Identifiers

PMID23118940
PMCPMC3485258

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.