ArticleNucleic acids research2013
MBGD update 2013: the microbial genome database for exploring the diversity of microbial world.
Article in Nucleic acids research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
29 citing papers in PubMed, 41 citations in OpenAlex.
- Reconstructing Evolutionary Histories with Hierarchical Orthologous Groups.Journal of molecular evolution · 2025Review
- Music of metagenomics-a review of its applications, analysis pipeline, and associated tools.Functional & integrative genomics · 2022Review
- gutMDisorder: a comprehensive database for dysbiosis of the gut microbiota in disorders and interventions.Nucleic acids research · 2020Article
- Identification of Genome Sequences of Polyphosphate-Accumulating Organisms by Machine Learning.Frontiers in cell and developmental biology · 2020Article
- OMA standalone: orthology inference among public and custom genomes and transcriptomes.Genome research · 2019Article
- MBGD update 2018: microbial genome database based on hierarchical orthology relations covering closely related and distantly related comparisons.Nucleic acids research · 2019Article
- Modified mevalonate pathway of the archaeonProceedings of the National Academy of Sciences of the United States of America · 2018Article
- Bacterial endosymbiont Cardinium cSfur genome sequence provides insights for understanding the symbiotic relationship in Sogatella furcifera host.BMC genomics · 2018Article
- The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces.Nucleic acids research · 2018Article
- Automatic identification of optimal marker genes for phenotypic and taxonomic groups of microorganisms.PloS one · 2018Article
- An acid-tolerant ammonia-oxidizing γ-proteobacterium from soil.The ISME journal · 2017Article
- A systematic study of the whole genome sequence ofSynthetic and systems biotechnology · 2016Article
- EDGAR 2.0: an enhanced software platform for comparative gene content analyses.Nucleic acids research · 2016Article
- A Novel Approach to Helicobacter pylori Pan-Genome Analysis for Identification of Genomic Islands.PloS one · 2016Article
- Cross-species conservation of complementary amino acid-ribonucleobase interactions and their potential for ribosome-free encoding.Scientific reports · 2015Article
- Circulating microbial RNA and health.Scientific reports · 2015Article
- MBGD update 2015: microbial genome database for flexible ortholog analysis utilizing a diverse set of genomic data.Nucleic acids research · 2015Article
- A New Comparative-Genomics Approach for Defining Phenotype-Specific Indicators Reveals Specific Genetic Markers in Predatory Bacteria.PloS one · 2015Article
- Construction of an ortholog database using the semantic web technology for integrative analysis of genomic data.PloS one · 2015Article
- Identification of novel vaccine candidates against Acinetobacter baumannii using reverse vaccinology.Human vaccines & immunotherapeutics · 2015Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The microbial genome database for comparative analysis (MBGD, available at http://mbgd.genome.ad.jp/) is a platform for microbial genome comparison based on orthology analysis. As its unique feature, MBGD allows users to conduct orthology analysis among any specified set of organisms; this flexibility allows MBGD to adapt to a variety of microbial genomic study. Reflecting the huge diversity of microbial world, the number of microbial genome projects now becomes several thousands. To efficiently explore the diversity of the entire microbial genomic data, MBGD now provides summary pages for pre-calculated ortholog tables among various taxonomic groups. For some closely related taxa, MBGD also provides the conserved synteny information (core genome alignment) pre-calculated using the CoreAligner program. In addition, efficient incremental updating procedure can create extended ortholog table by adding additional genomes to the default ortholog table generated from the representative set of genomes. Combining with the functionalities of the dynamic orthology calculation of any specified set of organisms, MBGD is an efficient and flexible tool for exploring the microbial genome diversity.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.