Evidence map›Paper›PMID 23118416›Full record

ArticleRNA (New York, N.Y.)2012

Inhibition of polyadenylation reduces inflammatory gene induction.

Alexander Kondrashov, Hedda A Meijer, Adeline Barthet-Barateig, Hannah N Parker, Asma Khurshid, Sarah Tessier, Marie Sicard, Alan J Knox, Linhua Pang, Cornelia H De Moor

Open access · hybridAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 1 synthesis or guideline pooled it, 81 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Alexander KondrashovSchool of Pharmacy, The University of Nottingham, Nottingham NG7 2RD, United Kingdom.
Hedda A Meijer
Adeline Barthet-Barateig
Hannah N Parker
Asma Khurshid
Sarah Tessier
Marie Sicard
Alan J Knox
Linhua Pang
Cornelia H De Moor
University of Nottingham · GB

Funding

Biotechnology and Biological Sciences Research Council BB/G001847/1National Centre for the Replacement, Refinement and Reduction of Animals in Research G1001804/1Wellcome Trust WT078227MA
6 · The paper itself

Abstract

Cordycepin (3' deoxyadenosine) has long been used in the study of in vitro assembled polyadenylation complexes, because it terminates the poly(A) tail and arrests the cleavage complex. It is derived from caterpillar fungi, which are highly prized in Chinese traditional medicine. Here we show that cordycepin specifically inhibits the induction of inflammatory mRNAs by cytokines in human airway smooth muscle cells without affecting the expression of control mRNAs. Cordycepin treatment results in shorter poly(A) tails, and a reduction in the efficiency of mRNA cleavage and transcription termination is observed, indicating that the effects of cordycepin on 3' processing in cells are similar to those described in in vitro reactions. For the CCL2 and CXCL1 mRNAs, the effects of cordycepin are post-transcriptional, with the mRNA disappearing during or immediately after nuclear export. In contrast, although the recruitment of RNA polymerase II to the IL8 promoter is also unaffected, the levels of nascent transcript are reduced, indicating a defect in transcription elongation. We show that a reporter construct with 3' sequences from a histone gene is unaffected by cordycepin, while CXCL1 sequences confer cordycepin sensitivity to the reporter, demonstrating that polyadenylation is indeed required for the effect of cordycepin on gene expression. In addition, treatment with another polyadenyation inhibitor and knockdown of poly(A) polymerase α also specifically reduced the induction of inflammatory mRNAs. These data demonstrate that there are differences in the 3' processing of inflammatory and housekeeping genes and identify polyadenylation as a novel target for anti-inflammatory drugs.

Indexed as

AnimalsAnti-Inflammatory Agents, Non-SteroidalCell LineChemokine CCL2Chemokine CXCL1DeoxyadenosinesDNA-Directed RNA PolymerasesGene ExpressionHeLa CellsHumansInflammationInflammation MediatorsInterleukin-8MiceMyocytes, Smooth MuscleNF-kappa BAnti-Inflammatory Agents, Non-SteroidalCCL2 protein, humanChemokine CCL2Chemokine CXCL1cordycepinCXCL1 protein, humanCXCL8 protein, humanDeoxyadenosinesDNA-Directed RNA PolymerasesInflammation MediatorsInterleukin-8NF-kappa BRNA, MessengerTumor Necrosis Factor-alpha

Identifiers

PMID23118416
PMCPMC3504674
OpenAlexW2129882571

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.