Evidence map›Paper›PMID 23118233›Full record

ArticleThe Journal of biological chemistry2012

Three-dimensional localization of the α and β subunits and of the II-III loop in the skeletal muscle L-type Ca2+ channel.

John Szpyt, Nancy Lorenzon, Claudio F Perez, Ethan Norris, Paul D Allen, Kurt G Beam, Montserrat Samsó

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. CaTrends in biochemical sciences · 2017
    Review
  2. A guide to the 3D structure of the ryanodine receptor type 1 by cryoEM.Protein science : a publication of the Protein Society · 2017
    Review
  3. Article
  4. Article
  5. Article
  6. 3D Structure of the Dihydropyridine Receptor of Skeletal Muscle.European journal of translational myology · 2015
    Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

John SzpytDepartment of Anesthesia, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts 02115, USA.
Nancy Lorenzon
Claudio F Perez
Ethan Norris
Paul D Allen
Kurt G Beam
Montserrat Samsó

Funding

Uncovering the Molecular Basis of Malignant HyperthermiaP01AR052354 · NIAMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI PESSAH, ISSAC N · 2006 to 2016
$13.4M
Regulation of Membrane ExcitabilityR01AR055104 · NIAMS · UNIVERSITY OF COLORADO DENVER · PI BEAM, KURT G · 2008 to 2012
$3.1M
Structural/functional interaction between RyR1 and DHPR alpha1s and Beta1a isoforK01AR054818 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI PEREZ, CLAUDIO F · 2008 to 2012
$655k
Integral membrane protein overexpression using organ bioreactorsR01GM081819 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI ALLEN, PAUL D · 2007 to 2009
$606k
NIAMS NIH HHS 2R01AR05510NIAMS NIH HHS 5K01AR054818NIAMS NIH HHS K01 AR054818NIAMS NIH HHS P01 AR052354NIAMS NIH HHS R01 AR055104NIGMS NIH HHS 1R01GM081819NIGMS NIH HHS R01 GM081819
6 · The paper itself

Abstract

The L-type Ca(2+) channel (dihydropyridine receptor (DHPR) in skeletal muscle acts as the voltage sensor for excitation-contraction coupling. To better resolve the spatial organization of the DHPR subunits (α(1s) or Ca(V)1.1, α(2), β(1a), δ1, and γ), we created transgenic mice expressing a recombinant β(1a) subunit with YFP and a biotin acceptor domain attached to its N- and C- termini, respectively. DHPR complexes were purified from skeletal muscle, negatively stained, imaged by electron microscopy, and subjected to single-particle image analysis. The resulting 19.1-Å resolution, three-dimensional reconstruction shows a main body of 17 × 11 × 8 nm with five corners along its perimeter. Two protrusions emerge from either face of the main body: the larger one attributed to the α(2)-δ1 subunit that forms a flexible hook-shaped feature and a smaller protrusion on the opposite side that corresponds to the II-III loop of Ca(V)1.1 as revealed by antibody labeling. Novel features discernible in the electron density accommodate the atomic coordinates of a voltage-gated sodium channel and of the β subunit in a single docking possibility that defines the α1-β interaction. The β subunit appears more closely associated to the membrane than expected, which may better account for both its role in localizing the α(1s) subunit to the membrane and its suggested role in excitation-contraction coupling.

Indexed as

Molecular Docking SimulationAnimalsCalcium Channels, L-TypeHumansMiceMice, TransgenicMicroscopy, ElectronMuscle ProteinsMuscle, SkeletalProtein Structure, QuaternaryProtein Structure, SecondaryProtein SubunitsCalcium Channels, L-TypeMuscle ProteinsProtein Subunits

Identifiers

PMID23118233
PMCPMC3527968

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.