Evidence map›Paper›PMID 23118027›Full record

ArticleFASEB journal : official publication of the Federation of American Societies for Experimental Biology2013

The immunoglobulin domain of the sodium channel β3 subunit contains a surface-localized disulfide bond that is required for homophilic binding.

Nikitha R Yereddi, Fiona S Cusdin, Sivakumar Namadurai, Len C Packman, Tom P Monie, Peter Slavny, Jeffrey J Clare, Andrew J Powell, Antony P Jackson

Abstract read
In one paragraph

Article in FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Chemometric Models of Differential Amino Acids at the NaMolecules (Basel, Switzerland) · 2020
    Article
  9. Review
  10. Supramolecular clustering of the cardiac sodium channel Nav1.5 in HEK293F cells, with and without the auxiliary β3-subunit.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
    Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Mechanisms of noncovalent β subunit regulation of NaThe Journal of general physiology · 2017
    Article
  16. Characterization of specific allosteric effects of the NaEuropean biophysics journal : EBJ · 2017
    Article
  17. Voltage-Gated Na+ Channels: Not Just for Conduction.Cold Spring Harbor perspectives in biology · 2016
    Review
  18. Review
  19. Review
  20. Dual roles of voltage-gated sodium channels in development and cancer.The International journal of developmental biology · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Nikitha R YereddiDepartment of Biochemistry, University of Cambridge, Cambridge, UK.
Fiona S Cusdin
Sivakumar Namadurai
Len C Packman
Tom P Monie
Peter Slavny
Jeffrey J Clare
Andrew J Powell
Antony P Jackson

Funding

Biotechnology and Biological Sciences Research CouncilWellcome TrustWellcome Trust WT085090MA
6 · The paper itself

Abstract

The β subunits of voltage-gated sodium (Na(v)) channels possess an extracellular immunoglobulin (Ig) domain that is related to the L1 family of cell-adhesion molecules (CAMs). Here we show that in HEK293 cells, secretion of the free Ig domain of the β3 subunit is reduced significantly when it is coexpressed with the full-length β3 and β1 subunits but not with the β2 subunit. Using immunoprecipitation, we show that the β3 subunit can mediate trans homophilic-binding via its Ig domain and that the β3-Ig domain can associate heterophilically with the β1 subunit. Evolutionary tracing analysis and structural modeling identified a cluster of surface-localized amino acids fully conserved between the Ig domains of all known β3 and β1 sequences. A notable feature of this conserved surface cluster is the presence of two adjacent cysteine residues that previously we have suggested may form a disulfide bond. We now confirm the presence of the disulfide bond in β3 using mass spectrometry, and we show that its integrity is essential for the association of the full-length, membrane-anchored β3 subunit with itself. However, selective reduction of this surface disulfide bond did not inhibit homophilic binding of the purified β3-Ig domain in free solution. Hence, the disulfide bond itself is unlikely to be part of the homophilic binding site. Rather, we suggest that its integrity ensures the Ig domain of the membrane-tethered β3 subunit adopts the correct orientation for productive association to occur in vivo.

Indexed as

Amino Acid SequenceBinding SitesDisulfidesEvolution, MolecularHEK293 CellsHumansModels, MolecularMolecular Sequence DataProtein Interaction Domains and MotifsProtein MultimerizationProtein SubunitsRecombinant ProteinsSpectrometry, Mass, Electrospray IonizationTandem Mass SpectrometryVoltage-Gated Sodium Channel beta-1 SubunitVoltage-Gated Sodium Channel beta-3 SubunitDisulfidesProtein SubunitsRecombinant ProteinsSCN1B protein, humanSCN3B protein, humanVoltage-Gated Sodium Channel beta-1 SubunitVoltage-Gated Sodium Channel beta-3 Subunit

Identifiers

PMID23118027
PMCPMC3583845

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.