Evidence map›Paper›PMID 23117718›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2013

Fine genetic mapping of RXopJ4, a bacterial spot disease resistance locus from Solanum pennellii LA716.

Molly Sharlach, Douglas Dahlbeck, Lily Liu, Joshua Chiu, José M Jiménez-Gómez, Seisuke Kimura, Daniel Koenig, Julin N Maloof, Neelima Sinha, Gerald V Minsavage and 3 more

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Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Foods (Basel, Switzerland) · 2022
    Review
  8. Migration Drives the Replacement ofFrontiers in microbiology · 2022
    Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Advances and Challenges in Bacterial Spot Resistance Breeding in Tomato (International journal of molecular sciences · 2020
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Molly SharlachDepartment of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA. sharlach@berkeley.edu
Douglas Dahlbeck
Lily Liu
Joshua Chiu
José M Jiménez-Gómez
Seisuke Kimura
Daniel Koenig
Julin N Maloof
Neelima Sinha
Gerald V Minsavage
Jeffrey B Jones
Robert E Stall
Brian J Staskawicz

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The RXopJ4 resistance locus from the wild accession Solanum pennellii (Sp) LA716 confers resistance to bacterial spot disease of tomato (S. lycopersicum, Sl) caused by Xanthomonas perforans (Xp). RXopJ4 resistance depends on recognition of the pathogen type III effector protein XopJ4. We used a collection of Sp introgression lines (ILs) to narrow the RXopJ4 locus to a 4.2-Mb segment on the long arm of chromosome 6, encompassed by the ILs 6-2 and 6-2-2. We then adapted or developed a collection of 14 molecular markers to map on a segregating F(2) population from a cross between the susceptible parent Sl FL8000 and the resistant parent RXopJ4 8000 OC(7). In the F(2) population, a 190-kb segment between the markers J350 and J352 cosegregated with resistance. This fine mapping will enable both the identification of candidate genes and the detection of resistant plants using cosegregating markers. The RXopJ4 resistance gene(s), in combination with other recently characterized genes and a quantitative trait locus (QTL) for bacterial spot disease resistance, will likely be an effective tool for the development of durable resistance in cultivated tomato.

Indexed as

Chromosome MappingQuantitative Trait LociChromosomes, PlantDisease ResistanceDNA, PlantGenes, PlantGenetic MarkersPhenotypePlant DiseasesSequence Analysis, DNASolanumXanthomonasDNA, PlantGenetic Markers

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.