Evidence map›Paper›PMID 23117580›Full record

ArticleEpigenetics2012

Modifying metabolically sensitive histone marks by inhibiting glutamine metabolism affects gene expression and alters cancer cell phenotype.

Natalie E Simpson, Volodymyr P Tryndyak, Marta Pogribna, Frederick A Beland, Igor P Pogribny

Open access · bronzeAbstract read
In one paragraph

Article in Epigenetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 80 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Chronic Ammonia Stress in Chinese Perch (Antioxidants (Basel, Switzerland) · 2025
    Article
  5. Article
  6. Review
  7. Review
  8. Metabolomics combined with mathematical analysis reveals metabolic pathways specific to metastatic cancers.Translational breast cancer research : a journal focusing on translational research in breast cancer · 2024
    Article
  9. Review
  10. Ovarian Cancer and Glutamine Metabolism.International journal of molecular sciences · 2023
    Review
  11. Article
  12. Overview of Cancer Metabolism and Signaling Transduction.International journal of molecular sciences · 2022
    Review
  13. Review
  14. Article
  15. Review
  16. Review
  17. Review
  18. Review
  19. Article
  20. Modeling the Th17 and Tregs Paradigm: Implications for Cancer Immunotherapy.Frontiers in cell and developmental biology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Natalie E SimpsonDivision of Biochemical Toxicology, National Center for Toxicological Research, Jefferson, AR, USA.
Volodymyr P Tryndyak
Marta Pogribna
Frederick A Beland
Igor P Pogribny
National Center for Toxicological Research · USBiochemical Society · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The interplay of metabolism and epigenetic regulatory mechanisms has become a focal point for a better understanding of cancer development and progression. In this study, we have acquired data supporting previous observations that demonstrate glutamine metabolism affects histone modifications in human breast cancer cell lines. Treatment of non-invasive epithelial (T-47D and MDA-MB-361) and invasive mesenchymal (MDA-MB-231 and Hs-578T) breast cancer cell lines with the glutaminase inhibitor, Compound 968, resulted in cytotoxicity in all cell lines, with the greatest effect being observed in MDA-MB-231 breast cancer cells. Compound 968-treatment induced significant downregulation of 20 critical cancer-related genes, the majority of which are anti-apoptotic and/or promote metastasis, including AKT, BCL2, BCL2L1, CCND1, CDKN3, ERBB2, ETS1, E2F1, JUN, KITLG, MYB, and MYC. Histone H3K4me3, a mark of transcriptional activation, was reduced at the promoters of all but one of these critical cancer genes. The decrease in histone H3K4me3 at global and gene-specific levels correlated with reduced expression of SETD1 and ASH2L, genes encoding the histone H3K4 methyltransferase complex. Further, the expression of other epigenetic regulatory genes, known to be downregulated during apoptosis (e.g., DNMT1, DNMT3B, SETD1 and SIRT1), was also downregulated by Compound 968. These changes in gene expression and histone modifications were accompanied by the activation of apoptosis, and decreased invasiveness and resistance of MDA-MB-231 cells to chemotherapeutic drug doxorubicin. The results of this study provide evidence to a link between cytotoxicity caused by inhibiting glutamine metabolism with alterations of the epigenome of breast cancer cells and suggest that modification of intracellular metabolism may enhance the efficiency of epigenetic therapy.

Indexed as

ApoptosisBenzophenanthridinesBreast NeoplasmsCell Line, TumorCell SurvivalDNA-Binding ProteinsDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3BEnzyme InhibitorsEpigenesis, GeneticFemaleGene Expression Regulation, NeoplasticGlutaminaseGlutamineHistone-Lysine N-MethyltransferaseASH2L protein, humanBenzophenanthridinescompound 968DNA-Binding ProteinsDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3BDNMT1 protein, humanEnzyme InhibitorsGlutaminaseGlutamineHistone-Lysine N-MethyltransferaseHistonesNuclear ProteinsSetd1A protein, humanSIRT1 protein, humanSirtuin 1Transcription Factors

Identifiers

PMID23117580
PMCPMC3528696
OpenAlexW1969050405

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.