Evidence map›Paper›PMID 23117049›Full record

ArticleMutation research2013

The role of base excision repair genes OGG1, APN1 and APN2 in benzo[a]pyrene-7,8-dione induced p53 mutagenesis.

Zahidur Abedin, Melissa Louis-Juste, Melissa Stangl, Jeffrey Field

Abstract read
In one paragraph

Article in Mutation research, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Zahidur AbedinDepartment of Pharmacology, Centers for Excellence in Environmental Toxicology and Cancer Pharmacology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104-6084, USA.
Melissa Louis-Juste
Melissa Stangl
Jeffrey Field
University of Pennsylvania · US

Funding

Translational Research Support CoreP30ES013508 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI Rebecca A Simmons · 2006 to 2026
$35.3M
Role of Pak kinases in survival and motilityR01GM048241 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI FIELD, JEFFREY M · 1992 to 2010
$3.3M
Mutagenesis of p53 by reactive PAH and ROSR01ES015662 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI FIELD, JEFFREY M · 2008 to 2012
$1.6M
Steer and trees summer research programsR25ES021649 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI FIELD, JEFFREY M · 2013 to 2022
$830k
Summer Mentorship in Environmental Health Sciences for High School and UndergraduR25ES016146 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI FIELD, JEFFREY M · 2008 to 2012
$311k
NIEHS NIH HHS P30 ES013508NIEHS NIH HHS R01 ES015662NIEHS NIH HHS R25 ES016146NIEHS NIH HHS R25 ES021649NIGMS NIH HHS R01 GM048241NIGMS NIH HHS R01 GM48241PHS HHS P30 ESO013508PHS HHS R01PHS HHS R25 ESO016146
6 · The paper itself

Abstract

Lung cancer is primarily caused by exposure to tobacco smoke. Tobacco smoke contains numerous carcinogens, including polycyclic aromatic hydrocarbons (PAH). The most common PAH studied is benzo[a]pyrene (B[a]P). B[a]P is metabolically activated through multiple routes, one of which is catalyzed by aldo-keto reductase (AKR) to B[a]P-7,8-dione (BPQ). BPQ undergoes a futile redox cycle in the presence of NADPH to generate reactive oxygen species (ROS). ROS, in turn, damages DNA. Studies with a yeast p53 mutagenesis system found that the generation of ROS by PAH o-quinones may contribute to lung carcinogenesis because of similarities between the patterns (types of mutations) and spectra (location of mutations) and those seen in lung cancer. The patterns were dominated by G to T transversions, and the spectra in the experimental system have mutations at lung cancer hotspots. To address repair mechanisms that are responsible for BPQ induced damage we observed the effect of mutating two DNA repair genes OGG1 and APE1 (APN1 in yeast) and tested them in a yeast reporter system for p53 mutagenesis. There was an increase in both the mutant frequency and the number of G:C/T:A transversions in p53 treated with BPQ in ogg1 yeast but not in apn1 yeast. Knocking out APN2 increased mutagenesis in the apn1 cells. In addition, we did not find a strand bias on p53 treated with BPQ in ogg1 yeast. These studies suggest that Ogg1 is involved in repairing the oxidative damage caused by BPQ, Apn1 and Apn2 have redundant functions and that the stand bias seen in lung cancer may not be due to impaired repair of oxidative lesions.

Indexed as

DNA DamageGenes, p53MutagenesisBenzo(a)pyreneDNA-(Apurinic or Apyrimidinic Site) LyaseDNA GlycosylasesDNA RepairDNA Repair EnzymesEndodeoxyribonucleasesMutagensSaccharomyces cerevisiae ProteinsApn1 protein, S cerevisiaeAPN2 protein, S cerevisiaeBenzo(a)pyreneDNA-(Apurinic or Apyrimidinic Site) LyaseDNA GlycosylasesDNA Repair EnzymesEndodeoxyribonucleasesMutagensoxoguanine glycosylase 1, humanSaccharomyces cerevisiae Proteins

Identifiers

PMID23117049
PMCPMC3931135
OpenAlexW2199020333

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.