Evidence map›Paper›PMID 23114777›Full record

ArticleAntimicrobial agents and chemotherapy2013

Biochemical characterization of cardiolipin synthase mutations associated with daptomycin resistance in enterococci.

Milya Davlieva, Wanna Zhang, Cesar A Arias, Yousif Shamoo

Open access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 89 citations in OpenAlex.

  1. Article
  2. A two-component system signaling hub controls enterococcal membrane remodeling in response to daptomycin.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  6. Review
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  13. New Mutations inFrontiers in microbiology · 2022
    Article
  14. Article
  15. Frontiers in microbiology · 2021
    Article
  16. Review
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Milya DavlievaDepartment of Biochemistry and Cell Biology, Rice University, Houston, Texas, USA.
Wanna Zhang
Cesar A Arias
Yousif Shamoo
Rice University · USUniversidad El Bosque · CO

Funding

Defining Evolutionary Trajectories: Molecular adaptation to antibiotic resistanceR01AI080714 · NIAID · RICE UNIVERSITY · PI SHAMOO, YOUSIF · 2009 to 2023
$4.3M
Molecular Mechanisms Of Daptomycin Resistance In EnterococciR01AI093749 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ARIAS, CESAR AUGUSTO · 2011 to 2015
$1.9M
Defining Evolutionary Trajectories: Molecular adaptation to antibiotic resistanceR56AI080714 · NIAID · RICE UNIVERSITY · PI SHAMOO, YOUSIF · 2013 to 2013
$360k
NIAID NIH HHS R01 AI080714NIAID NIH HHS R01 AI093749NIAID NIH HHS R01 AI AI080714NIAID NIH HHS R56 AI080714
6 · The paper itself

Abstract

Daptomycin (DAP) resistance in enterococci has been linked to mutations in genes that alter the cell envelope stress response (CESR) (liaFSR) and changes in enzymes that directly affect phospholipid homeostasis, and these changes may alter membrane composition, such as that of cardiolipin synthase (Cls). While Cls substitutions are observed in response to DAP therapy, the effect of these mutations on Cls activity remains obscure. We have expressed, purified, and characterized Cls enzymes from both Enterococcus faecium S447 (residues 52 to 482; Cls447a) and Enterococcus faecalis S613 (residues 53 to 483; Cls613a) as well as Cls variants harboring a single-amino-acid change derived from DAP-resistant isolates of E. faecium. E. faecium Cls447a and E. faecalis Cls613a are tightly associated with the membrane and copurify with their substrate, phosphatidylglycerol (PG), and product, cardiolipin (CL). The amount of PG that copurifies with Cls is in molar excess to protein, suggesting that the enzyme localizes to PG-rich membrane regions. Both Cls447a(H215R) and Cls447a(R218Q) showed an increase in V(max) (μM CL/min/μM protein) from 0.16 ± 0.01 to 0.26 ± 0.02 and 0.26 ± 0.04, respectively, indicating that mutations associated with adaptation to DAP increase Cls activity. Modeling of Cls447a to Streptomyces sp. phospholipase D indicates that the adaptive mutations Cls447a(H215R) and Cls447a(R218Q) are proximal to the phospholipase domain 1 (PLD1) active site and near the putative nucleophile H217. As mutations to Cls are part of a larger genomic adaptation process, increased Cls activity is likely to be highly epistatic with other changes to facilitate DAP resistance.

Indexed as

MutationAnti-Bacterial AgentsBacterial ProteinsCardiolipinsCatalytic DomainDaptomycinDrug Resistance, BacterialEnterococcus faecalisEnterococcus faeciumEpistasis, GeneticEscherichia coliKineticsLipid MetabolismMembrane ProteinsModels, MolecularPhosphatidylglycerolsAnti-Bacterial AgentsBacterial ProteinsCardiolipinscardiolipin synthetaseDaptomycinMembrane ProteinsPhosphatidylglycerolsPhospholipase DRecombinant ProteinsTransferases (Other Substituted Phosphate Groups)

Identifiers

PMID23114777
PMCPMC3535954
OpenAlexW2097222304

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.