ReviewThe Plant cell2012
Multiscale systems analysis of root growth and development: modeling beyond the network and cellular scales.
Review in The Plant cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
30 citing papers in PubMed.
- Root phenotypes for improved nitrogen capture.Plant and soil · 2024Review
- Breeding crops for drought-affected environments and improved climate resilience.The Plant cell · 2023Review
- Integrated root phenotypes for improved rice performance under low nitrogen availability.Plant, cell & environment · 2022Article
- Root architecture and hydraulics converge for acclimation to changing water availability.Nature plants · 2020Review
- Model selection and parameter estimation for root architecture models using likelihood-free inference.Journal of the Royal Society, Interface · 2019Article
- Theoretical models for branch formation in plants.Journal of plant research · 2019Review
- Review
- Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences.Frontiers in plant science · 2017Review
- X-Ray Computed Tomography Reveals the Response of Root System Architecture to Soil Texture.Plant physiology · 2016Article
- Root System Architecture and Abiotic Stress Tolerance: Current Knowledge in Root and Tuber Crops.Frontiers in plant science · 2016Review
- Roots Withstanding their Environment: Exploiting Root System Architecture Responses to Abiotic Stress to Improve Crop Tolerance.Frontiers in plant science · 2016Review
- Tree Topology Estimation.IEEE transactions on pattern analysis and machine intelligence · 2015Article
- Localized auxin peaks in concentration-based transport models of the shoot apical meristem.Journal of the Royal Society, Interface · 2015Article
- New insights into root gravitropic signalling.Journal of experimental botany · 2015Review
- Mechanosensitive control of plant growth: bearing the load, sensing, transducing, and responding.Frontiers in plant science · 2015Review
- Jasmonates: Emerging Players in Controlling Temperature Stress Tolerance.Frontiers in plant science · 2015Review
- Image-based high-throughput field phenotyping of crop roots.Plant physiology · 2014Article
- Branching out in roots: uncovering form, function, and regulation.Plant physiology · 2014Review
- An approach to multiscale modelling with graph grammars.Annals of botany · 2014Article
- Mechanical modelling quantifies the functional importance of outer tissue layers during root elongation and bending.The New phytologist · 2014Article
Corrections and comments
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Authors and funding
7 authors.
Funding
Abstract
Over recent decades, we have gained detailed knowledge of many processes involved in root growth and development. However, with this knowledge come increasing complexity and an increasing need for mechanistic modeling to understand how those individual processes interact. One major challenge is in relating genotypes to phenotypes, requiring us to move beyond the network and cellular scales, to use multiscale modeling to predict emergent dynamics at the tissue and organ levels. In this review, we highlight recent developments in multiscale modeling, illustrating how these are generating new mechanistic insights into the regulation of root growth and development. We consider how these models are motivating new biological data analysis and explore directions for future research. This modeling progress will be crucial as we move from a qualitative to an increasingly quantitative understanding of root biology, generating predictive tools that accelerate the development of improved crop varieties.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.