Evidence map›Paper›PMID 23109335›Full record

ArticleThe Journal of biological chemistry2012

IgG Fab fragments forming bivalent complexes by a conformational mechanism that is reversible by osmolytes.

Alfreda D Nelson, Michele M Hoffmann, Christopher A Parks, Surendra Dasari, Adam G Schrum, Diana Gil

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 2 countries.

Alfreda D NelsonDepartment of Immunology, Center for Individualized Medicine, Mayo Clinic College of Medicine, Rochester, Minnesota 55905, USA.
Michele M Hoffmann
Christopher A Parks
Surendra Dasari
Adam G Schrum
Diana Gil
Mayo Clinic · US

Funding

TRAINING IN TRANSLATIONAL RESEARCH: BENCH TO BEDSIDER25GM055252 · NIGMS · MAYO CLINIC ROCHESTER · PI LUJAN, LUIS, MAHER, LOUIS JAMES · 1996 to 2022
$8.3M
Predoctoral Training Program in Molecular PharmacologyT32GM072474 · NIGMS · MAYO CLINIC ROCHESTER · PI KARNITZ, LARRY M · 2005 to 2020
$2.4M
Mechanisms and consequences of CD3 rearrangement during TCR triggeringR56AI097187 · NIAID · MAYO CLINIC ROCHESTER · PI GIL PAGES, DIANA · 2012 to 2012
$296k
NIAID NIH HHS 1R56AI097187-01NIAID NIH HHS R56 AI097187NIGMS NIH HHS R25 GM055252NIGMS NIH HHS T32 GM072474
6 · The paper itself

Abstract

Generated by proteolytic cleavage of immunoglobulin, Fab fragments possess great promise as blocking reagents, able to bind receptors or other targets without inducing cross-linking. However, aggregation of Fab preparations is a common occurrence, which generates intrinsic stimulatory capacity and thwarts signal blockade strategies. Using a panel of biochemical approaches, including size exclusion chromatography, SDS-PAGE, mass spectrometry, and cell stimulation followed by flow cytometry, we have measured the oligomerization and acquisition of stimulatory capacity that occurs in four monoclonal IgG Fabs specific for TCR/CD3. Unexpectedly, we observed that all Fabs spontaneously formed complexes that were precisely bivalent, and these bivalent complexes possessed most of the stimulatory activity of each Fab preparation. Fabs composing bivalent complexes were more susceptible to proteolysis than monovalent Fabs, indicating a difference in conformation between the Fabs involved in these two different states of valency. Because osmolytes represent a class of compounds that stabilize protein folding and conformation, we sought to determine the extent to which the amino acid osmolyte l-proline might impact bivalent Fab complexation. We found that l-proline (i) inhibited the adoption of the conformation associated with bivalent complexation, (ii) preserved Fab monovalency, (iii) reversed the conformation of preformed bivalent Fabs to that of monovalent Fabs, and (iv) separated a significant percentage of preformed bivalent complexes into monovalent species. Thus, Fab fragments can adopt a conformation that is compatible with folding or packing of a bivalent complex in a process that can be inhibited by osmolytes.

Indexed as

AnimalsCarbohydratesCaseinsElectrophoresis, Gel, Two-DimensionalImmunoglobulin Fab FragmentsImmunoglobulin GLipidsLymphocyte ActivationMiceMice, Inbred C57BLPlant Proteins, DietaryProlineProtein ConformationProtein StabilityProteolysisReceptor-CD3 Complex, Antigen, T-CellCarbohydratesCaseinsImmunoglobulin Fab FragmentsImmunoglobulin GLipidsOsmolitePlant Proteins, DietaryProlineReceptor-CD3 Complex, Antigen, T-Cell

Identifiers

PMID23109335
PMCPMC3522289
OpenAlexW2063164778

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.