Evidence map›Paper›PMID 23108237›Full record

ArticleJournal of structural biology2013

Glycerol inhibits water permeation through Plasmodium falciparum aquaglyceroporin.

Liao Y Chen

Open access · greenAbstract read
In one paragraph

Article in Journal of structural biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
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  6. Does Plasmodium falciparum have an Achilles' heel?Malaria chemotherapy, control & elimination · 2014
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author at 1 institution in 1 country.

Liao Y ChenDepartment of Physics, University of Texas at San Antonio, One UTSA Circle, San Antonio, TX 78249, USA. Liao.Chen@utsa.edu
The University of Texas at San Antonio · US

Funding

Theoretical study of structure-function correlations of Aquaporin V and mutantsSC3GM084834 · NIGMS · UNIVERSITY OF TEXAS SAN ANTONIO · PI CHEN, LIAO Y · 2008 to 2016
$865k
NIGMS NIH HHS GM084834NIGMS NIH HHS SC3 GM084834
6 · The paper itself

Abstract

Plasmodium falciparum aquaglyceroporin (PfAQP) is a multifunctional membrane protein in the plasma membrane of P. falciparum, the parasite that causes the most severe form of malaria. The current literature has established the science of PfAQP's structure, functions, and hydrogen-bonding interactions but left unanswered the following fundamental question: does glycerol modulate water permeation through aquaglyceroporin that conducts both glycerol and water? This paper provides an affirmative answer to this question of essential importance to the protein's functions. On the basis of the chemical-potential profile of glycerol from the extracellular bulk region, throughout PfAQP's conducting channel, to the cytoplasmic bulk region, this study shows the existence of a bound state of glycerol inside aquaglyceroporin's permeation pore, from which the dissociation constant is approximately 14μM. A glycerol molecule occupying the bound state occludes the conducting pore through which permeating molecules line up in single file by hydrogen-bonding with one another and with the luminal residues of aquaglyceroporin. In this way, glycerol inhibits permeation of water and other permeants through aquaglyceroporin. The biological implications of this theory are discussed and shown to agree with the existent in vitro data. It turns out that the structure of aquaglyceroporin is perfect for the van der Waals interactions between the protein and glycerol to cause the existence of the bound state deep inside the conducting pore and, thus to play an unexpected but significant role in aquaglyceroporin's functions.

Indexed as

Molecular Dynamics SimulationBinding SitesCell Membrane PermeabilityGlycerolHydrogen BondingPlasmodium falciparumPorinsProtein BindingProtein Structure, QuaternaryProtozoan ProteinsThermodynamicsWaterGlycerolPfAQP protein, Plasmodium falciparumPorinsProtozoan ProteinsWater

Identifiers

PMID23108237
PMCPMC3525719
OpenAlexW1973814782

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.