Evidence map›Paper›PMID 23106691›Full record

ArticleJournal of proteome research2012

Proteomic profile identifies dysregulated pathways in Cornelia de Lange syndrome cells with distinct mutations in SMC1A and SMC3 genes.

Anna Gimigliano, Linda Mannini, Laura Bianchi, Michele Puglia, Matthew A Deardorff, Stefania Menga, Ian D Krantz, Antonio Musio, Luca Bini

Open access · greenAbstract read
In one paragraph

Article in Journal of proteome research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
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  7. The multifaceted roles of cohesin in cancer.Journal of experimental & clinical cancer research : CR · 2022
    Review
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  11. Observational
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  16. Overexpression of the cohesin-core subunit SMC1A contributes to colorectal cancer development.Journal of experimental & clinical cancer research : CR · 2019
    Article
  17. Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Anna GimiglianoFunctional Proteomics Laboratory, Department of Biotechnologies, University of Siena, Siena, Italy.
Linda Mannini
Laura Bianchi
Michele Puglia
Matthew A Deardorff
Stefania Menga
Ian D Krantz
Antonio Musio
Luca Bini
University of Siena · ITInstitute of Genetic and Biomedical Research · ITChildren's Hospital of Philadelphia · US

Funding

VERTEBRATE ANIMAL MODELS OF CORNELIA DE LANGE SYNDROMEP01HD052860 · NICHD · CHILDREN'S HOSP OF PHILADELPHIA · PI KRANTZ, IAN D. · 2006 to 2015
$11.2M
The Cohesin Complex and Cornelia de Lange SyndromeK08HD055488 · NICHD · CHILDREN'S HOSP OF PHILADELPHIA · PI DEARDORFF, MATTHEW A · 2007 to 2011
$685k
NICHD NIH HHS K08 HD055488NICHD NIH HHS K08HD055488NICHD NIH HHS P01 HD052860NICHD NIH HHS P01HD052860
6 · The paper itself

Abstract

Mutations in cohesin genes have been identified in Cornelia de Lange syndrome (CdLS), but its etiopathogenetic mechanisms are still poorly understood. To define biochemical pathways that are affected in CdLS, we analyzed the proteomic profile of CdLS cell lines carrying mutations in the core cohesin genes, SMC1A and SMC3. Dysregulated protein expression was found in CdLS probands compared to controls. The proteomics analysis was able to discriminate between probands harboring mutations in the different domains of the SMC proteins. In particular, proteins involved in the response to oxidative stress were specifically down-regulated in hinge mutated probands. In addition, the finding that CdLS cell lines show an increase in global oxidative stress argues that it could contribute to some CdLS phenotypic features such as premature physiological aging and genome instability. Finally, the c-MYC gene represents a convergent hub lying at the center of dysregulated pathways, and is down-regulated in CdLS. This study allowed us to highlight, for the first time, specific biochemical pathways that are affected in CdLS, providing plausible causal evidence for some of the phenotypic features seen in CdLS.

Indexed as

MutationAmino Acid SequenceCase-Control StudiesCell Cycle ProteinsChondroitin Sulfate ProteoglycansChromosomal Proteins, Non-HistoneDe Lange SyndromeDNA-Binding ProteinsFemaleGene Expression RegulationGenomic InstabilityHumansMaleMass SpectrometryMolecular Sequence DataNuclear ProteinsCell Cycle ProteinsChondroitin Sulfate ProteoglycansChromosomal Proteins, Non-HistoneDNA-Binding ProteinsMYC protein, humanNuclear ProteinsPhosphoproteinsProteomeProto-Oncogene Proteins c-mycRAD21 protein, humanSMC3 protein, humanStructural Maintenance of Chromosome Protein 1

Identifiers

PMID23106691
PMCPMC3519430
OpenAlexW2090712075

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.