Evidence map›Paper›PMID 23105106›Full record

ArticleThe Journal of biological chemistry2012

Interactions of the human LIP5 regulatory protein with endosomal sorting complexes required for transport.

Jack J Skalicky, Jun Arii, Dawn M Wenzel, William-May B Stubblefield, Angela Katsuyama, Nathan T Uter, Monika Bajorek, David G Myszka, Wesley I Sundquist

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Structural Insights into AQP2 Targeting to Multivesicular Bodies.International journal of molecular sciences · 2019
    Article
  9. Review
  10. Article
  11. Review
  12. Plant and Mammal Aquaporins: Same but Different.International journal of molecular sciences · 2018
    Review
  13. Aquaporin Protein-Protein Interactions.International journal of molecular sciences · 2017
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Jack J SkalickyDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City, Utah 84112-5650, USA.
Jun Arii
Dawn M Wenzel
William-May B Stubblefield
Angela Katsuyama
Nathan T Uter
Monika Bajorek
David G Myszka
Wesley I Sundquist
University of Utah · US

Funding

X-ray Cryst. CoreP50GM082545 · NIGMS · UNIVERSITY OF UTAH · PI SUNDQUIST, WESLEY I. · 2007 to 2018
$51.1M
Biochemistry of HIV-1 Membrane Recognition and BuddingR01AI051174 · NIAID · UNIVERSITY OF UTAH · PI SUNDQUIST, WESLEY I. · 2002 to 2016
$7.2M
Biochemistry of HIV-1 BuddingR37AI051174 · NIAID · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI WESLEY I. SUNDQUIST · 2017 to 2026
$5.6M
NIAID NIH HHS AI051174NIAID NIH HHS R01 AI051174NIAID NIH HHS R37 AI051174NIGMS NIH HHS GM082545NIGMS NIH HHS P50 GM082545
6 · The paper itself

Abstract

The endosomal sorting complex required for transport (ESCRT) pathway remodels membranes during multivesicular body biogenesis, the abscission stage of cytokinesis, and enveloped virus budding. The ESCRT-III and VPS4 ATPase complexes catalyze the membrane fission events associated with these processes, and the LIP5 protein helps regulate their interactions by binding directly to a subset of ESCRT-III proteins and to VPS4. We have investigated the biochemical and structural basis for different LIP5-ligand interactions and show that the first microtubule-interacting and trafficking (MIT) module of the tandem LIP5 MIT domain binds CHMP1B (and other ESCRT-III proteins) through canonical type 1 MIT-interacting motif (MIM1) interactions. In contrast, the second LIP5 MIT module binds with unusually high affinity to a novel MIM element within the ESCRT-III protein CHMP5. A solution structure of the relevant LIP5-CHMP5 complex reveals that CHMP5 helices 5 and 6 and adjacent linkers form an amphipathic "leucine collar" that wraps almost completely around the second LIP5 MIT module but makes only limited contacts with the first MIT module. LIP5 binds MIM1-containing ESCRT-III proteins and CHMP5 and VPS4 ligands independently in vitro, but these interactions are coupled within cells because formation of stable VPS4 complexes with both LIP5 and CHMP5 requires LIP5 to bind both a MIM1-containing ESCRT-III protein and CHMP5. Our studies thus reveal how the tandem MIT domain of LIP5 binds different types of ESCRT-III proteins, promoting assembly of active VPS4 enzymes on the polymeric ESCRT-III substrate.

Indexed as

Amino Acid MotifsAnimalsATPases Associated with Diverse Cellular ActivitiesCell LineEndosomal Sorting Complexes Required for TransportHumansMiceProtein BindingProtein Structure, QuaternaryProtein Structure, TertiaryRabbitsStructure-Activity RelationshipVacuolar Proton-Translocating ATPasesATPases Associated with Diverse Cellular ActivitiesCHMP5 protein, humanEndosomal Sorting Complexes Required for TransportVacuolar Proton-Translocating ATPasesVPS4A protein, humanVTA1 protein, human

Identifiers

PMID23105106
PMCPMC3527974
OpenAlexW1967591469

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.