Evidence map›Paper›PMID 23104808›Full record

ArticleJournal of bacteriology2013

The extracytoplasmic function sigma factor EcfO protects Bacteroides fragilis against oxidative stress.

Ivan C Ndamukong, Jason Gee, C Jeffrey Smith

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 27 citations in OpenAlex.

  1. High-throughput analyses ofGut microbes · 2026
    Article
  2. Article
  3. Gene regulation inMicrobiology and molecular biology reviews : MMBR · 2025
    Review
  4. Article
  5. Article
  6. Review
  7. Dual membrane-spanning anti-sigma factors regulate vesiculation inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Implication of the σMicrobiology spectrum · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Efficient utilization of complex N-linked glycans is a selective advantage for Bacteroides fragilis in extraintestinal infections.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ivan C NdamukongDepartment of Microbiology and Immunology, Brody School of Medicine, East Carolina University, Greenville, North Carolina, USA.
Jason Gee
C Jeffrey Smith
East Carolina University · US

Funding

ROLE OF B.FRAGILIS OXYGEN STRESS RESPONSE IN INFECTIONR01AI040588 · NIAID · EAST CAROLINA UNIVERSITY · PI SMITH, CHARLES J. · 1999 to 2014
$3.5M
ROLE OF B.FRAGILIS OXYGEN STRESS RESPONSE IN INFECTIONR56AI040588 · NIAID · EAST CAROLINA UNIVERSITY · PI ROCHA, EDSON R, SMITH, CHARLES J. · 2009 to 2009
$334k
NIAID NIH HHS AI40588NIAID NIH HHS R01 AI040588NIAID NIH HHS R56 AI040588
6 · The paper itself

Abstract

The anaerobe Bacteroides fragilis is a highly aerotolerant, opportunistic pathogen that is an important component of the human intestinal microbiota. Aerotolerance has been linked to a robust oxidative stress response, which in turn is necessary for maximal virulence in a mouse intra-abdominal abscess model. During oxidative stress, there is a dynamic change in gene expression that encompasses a third of the genome, but there is a paucity of information on factors that control this response. A large number of transcription regulators, including about 14 extracytoplasmic function (ECF) sigma factors, are affected by oxidative stress, and one of these, EcfO, was used as a model of ECF sigma factor activity during stress. Genetic and biochemical experiments showed that EcfO was located in an operon with a structurally unique anti-sigma factor, Reo. Cells deleted for EcfO were impaired during exposure to oxygen or other forms of oxidative stress, whereas reo mutants were more resistant to stress. Protein-protein interaction experiments demonstrated that Reo directly interacts with and regulates the activity of EcfO. Expression microarray and chromatin affinity precipitation assays were used to identify target genes regulated by EcfO, and an EcfO recognition sequence was identified. The results revealed that EcfO controls a regulon of novel lipoproteins whose distribution in nature is restricted to members of the Bacteroidetes phylum.

Indexed as

AnimalsBacterial ProteinsBacteroides fragilisBase SequenceGene Expression Regulation, BacterialHumansMiceMolecular Sequence DataMutationOligonucleotide Array Sequence AnalysisOxidative StressPlasmidsSigma FactorBacterial ProteinsSigma Factor

Identifiers

PMID23104808
PMCPMC3536166
OpenAlexW2147484689

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.