Evidence map›Paper›PMID 23104006›Full record

SynthesisNature genetics2012

Genome-wide association meta-analysis identifies new endometriosis risk loci.

Dale R Nyholt, Siew-Kee Low, Carl A Anderson, Jodie N Painter, Satoko Uno, Andrew P Morris, Stuart MacGregor, Scott D Gordon, Anjali K Henders, Nicholas G Martin and 13 more

Open access · greenAbstract readMeta-Analysis
In one paragraph

Synthesis in Nature genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 159 papers, 19 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
159citing papers in PubMed, 19 pooled it
27.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

159 citing papers in PubMed, 19 syntheses or guidelines pooled it, 305 citations in OpenAlex.

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  11. Combination of the non-invasive tests for the diagnosis of endometriosis.The Cochrane database of systematic reviews · 2016
    Pooled it
  12. Blood biomarkers for the non-invasive diagnosis of endometriosis.The Cochrane database of systematic reviews · 2016
    Pooled it
  13. Endometrial biomarkers for the non-invasive diagnosis of endometriosis.The Cochrane database of systematic reviews · 2016
    Pooled it
  14. Imaging modalities for the non-invasive diagnosis of endometriosis.The Cochrane database of systematic reviews · 2016
    Pooled it
  15. Urinary biomarkers for the non-invasive diagnosis of endometriosis.The Cochrane database of systematic reviews · 2015
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  20. The importance of gene polymorphism in familial inheritance of endometriosis.International journal of gynaecology and obstetrics: the official organ of the International Federation of Gynaecology and Obstetrics · 2026
    Article

99 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 10 institutions in 4 countries.

Dale R NyholtQueensland Institute of Medical Research, Brisbane, Queensland, Australia. dale.nyholt@qimr.edu.au
Siew-Kee Low
Carl A Anderson
Jodie N Painter
Satoko Uno
Andrew P Morris
Stuart MacGregor
Scott D Gordon
Anjali K Henders
Nicholas G Martin
John Attia
Elizabeth G Holliday
Mark McEvoy
Rodney J Scott
Stephen H Kennedy
Susan A Treloar
Stacey A Missmer
Sosuke Adachi
Kenichi Tanaka
Yusuke Nakamura
Krina T Zondervan
Hitoshi Zembutsu
Grant W Montgomery
QIMR Berghofer Medical Research Institute · AUHunter Medical Research Institute · AUJohn Radcliffe Hospital · GBNiigata University · JPHarvard University · USSapporo Medical University · JPUniversity of Newcastle Australia · AUUniversity of Oxford · GBUniversity of Queensland · AUWellcome Sanger Institute · GB

Funding

Wellcome Trust 076113Wellcome Trust 084766Wellcome Trust 085235Wellcome Trust 085475Wellcome Trust 090532Wellcome Trust 098017Wellcome Trust 098051Wellcome Trust WT084766/Z/08/ZWellcome Trust WT085235/Z/08/Z
6 · The paper itself

Abstract

We conducted a genome-wide association meta-analysis of 4,604 endometriosis cases and 9,393 controls of Japanese and European ancestry. We show that rs12700667 on chromosome 7p15.2, previously found to associate with disease in Europeans, replicates in Japanese (P = 3.6 × 10(-3)), and we confirm association of rs7521902 at 1p36.12 near WNT4. In addition, we establish an association of rs13394619 in GREB1 at 2p25.1 with endometriosis and identify a newly associated locus at 12q22 near VEZT (rs10859871). Excluding cases of European ancestry of minimal or unknown severity, we identified additional previously unknown loci at 2p14 (rs4141819), 6p22.3 (rs7739264) and 9p21.3 (rs1537377). All seven SNP effects were replicated in an independent cohort and associated at P <5 × 10(-8) in a combined analysis. Finally, we found a significant overlap in polygenic risk for endometriosis between the genome-wide association cohorts of European and Japanese descent (P = 8.8 × 10(-11)), indicating that many weakly associated SNPs represent true endometriosis risk loci and that risk prediction and future targeted disease therapy may be transferred across these populations.

Indexed as

Genetic LociGenetic Predisposition to DiseaseGenome-Wide Association StudyAsian PeopleCarrier ProteinsChromosomes, Human, Pair 1Chromosomes, Human, Pair 2Chromosomes, Human, Pair 6Chromosomes, Human, Pair 7Chromosomes, Human, Pair 9Cohort StudiesEndometriosisFemaleHumansMembrane ProteinsNeoplasm ProteinsCarrier ProteinsGREB1 protein, humanMembrane ProteinsNeoplasm ProteinsVEZT protein, humanWnt4 ProteinWNT4 protein, human

Identifiers

PMID23104006
PMCPMC3527416
OpenAlexW2159594119

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.