Evidence map›Paper›PMID 23103964›Full record

ArticleNature neuroscience2012

Fluorescent and photo-oxidizing TimeSTAMP tags track protein fates in light and electron microscopy.

Margaret T Butko, Jin Yang, Yang Geng, Hyung Joon Kim, Noo Li Jeon, Xiaokun Shu, Mason R Mackey, Mark H Ellisman, Roger Y Tsien, Michael Z Lin

Abstract read
In one paragraph

Article in Nature neuroscience, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 72 citations in OpenAlex.

  1. Article
  2. Review
  3. N-degron pathways.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Review
  4. Article
  5. Article
  6. Spatiotemporal Insights Into RNA-Organelle Interactions in Neurons.Frontiers in cell and developmental biology · 2021
    Review
  7. Article
  8. RNA NTrends in neurosciences · 2020
    Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Kinase pathway inhibition restores PSD95 induction in neurons lacking fragile X mental retardation protein.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  15. Fluorescence Imaging Methods to Investigate Translation in Single Cells.Cold Spring Harbor perspectives in biology · 2019
    Review
  16. AnBiology open · 2018
    Article
  17. Programmable protein circuits in living cells.Science (New York, N.Y.) · 2018
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Margaret T ButkoDepartment of Pharmacology and Howard Hughes Medical Institute, University of California San Diego, La Jolla, California, USA.
Jin Yang
Yang Geng
Hyung Joon Kim
Noo Li Jeon
Xiaokun Shu
Mason R Mackey
Mark H Ellisman
Roger Y Tsien
Michael Z Lin
University of California, San Diego · USHoward Hughes Medical Institute · USPalo Alto University · USSeoul National University · KR

Funding

IVEM and Image Analysis ResourceP41GM103412 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ELLISMAN, MARK H · 2012 to 2019
$17.9M
GRADUATE TRAINING IN CELLULAR &MOLECULAR PHARMACOLOGYT32GM007752 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BROWN, JOAN HELLER, HANDEL, TRACY M · 1985 to 2023
$13.5M
New Probe and Methods for Correlated LM & EMR01GM086197 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ADAMS, STEPHEN ROY, BOASSA, DANIELA · 2008 to 2020
$8.3M
DYNAMICS OF SIGNAL TRANSDUCTION IN NEURONSR01NS027177 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ADAMS, STEPHEN ROY, ELLISMAN, MARK H · 1989 to 2017
$5.8M
DYNAMICS OF SIGNAL TRANSDUCTION IN NEURONSR37NS027177 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TSIEN, ROGER Y · 2007 to 2013
$4.8M
Revealing protein synthesis defects in Fragile X Syndrome with new chemical toolsR01NS076860 · NINDS · STANFORD UNIVERSITY · PI LIN, MICHAEL Z. · 2011 to 2014
$1.3M
Howard Hughes Medical InstituteNIGMS NIH HHS P41 GM103412NIGMS NIH HHS P41GM103412-24NIGMS NIH HHS R01 GM086197NIGMS NIH HHS T32 GM007752NINDS NIH HHS 4R37NS027177-23NINDS NIH HHS R01 NS027177NINDS NIH HHS R01 NS076860NINDS NIH HHS R01NS076860NINDS NIH HHS R37 NS027177
6 · The paper itself

Abstract

Protein synthesis is highly regulated throughout nervous system development, plasticity and regeneration. However, tracking the distributions of specific new protein species has not been possible in living neurons or at the ultrastructural level. Previously we created TimeSTAMP epitope tags, drug-controlled tags for immunohistochemical detection of specific new proteins synthesized at defined times. Here we extend TimeSTAMP to label new protein copies by fluorescence or photo-oxidation. Live microscopy of a fluorescent TimeSTAMP tag reveals that copies of the synaptic protein PSD95 are synthesized in response to local activation of growth factor and neurotransmitter receptors, and preferentially localize to stimulated synapses in rat neurons. Electron microscopy of a photo-oxidizing TimeSTAMP tag reveals new PSD95 at developing dendritic structures of immature neurons and at synapses in differentiated neurons. These results demonstrate the versatility of the TimeSTAMP approach for visualizing newly synthesized proteins in neurons.

Indexed as

Fluorescent DyesAnimalsAnimals, NewbornBacterial ProteinsCells, CulturedDisks Large Homolog 4 ProteinEpitopesHEK293 CellsHumansIntracellular Signaling Peptides and ProteinsLuminescent ProteinsMembrane ProteinsMicroscopy, ElectronMicroscopy, FluorescenceRatsRats, Sprague-DawleyBacterial ProteinsDisks Large Homolog 4 ProteinDLG4 protein, humanEpitopesFluorescent DyesIntracellular Signaling Peptides and ProteinsLuminescent ProteinsMembrane Proteinsyellow fluorescent protein, Bacteria

Identifiers

PMID23103964
PMCPMC3509268
OpenAlexW2066729875

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.