Evidence map›Paper›PMID 23103361›Full record

ArticleArchives of biochemistry and biophysics2013

Biochemical and biophysical characterization of recombinant rat apolipoprotein E: similarities to human apolipoprotein E3.

Tuyen N Tran, Sea H Kim, Carlos Gallo, Max Amaya, Jessica Kyees, Vasanthy Narayanaswami

Open access · greenAbstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 26 citations in OpenAlex.

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  16. Modeling Alzheimer's disease in transgenic rats.Molecular neurodegeneration · 2013
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Tuyen N TranDepartment of Chemistry and Biochemistry, 1250 Bellflower Boulevard, California State University Long Beach, Long Beach, CA 90840, USA.
Sea H Kim
Carlos Gallo
Max Amaya
Jessica Kyees
Vasanthy Narayanaswami
California State University, Long Beach · US

Funding

Transendothelial transport mediated modulations to the High Density LipoproteinSC3GM105561 · NIGMS · CALIFORNIA STATE UNIVERSITY LONG BEACH · PI NARAYANASWAMI, VASANTHY · 2013 to 2021
$876k
Short Term Research Education Program to Increase Diversity in Health ResearchR25HL096365 · NHLBI · CHILDREN'S HOSPITAL & RES CTR AT OAKLAND · PI LUBIN, BERTRAM HAROLD, NARAYANASWAMI, VASANTHY · 2009 to 2013
$818k
NHLBI NIH HHS HL096365NHLBI NIH HHS R25 HL096365NIGMS NIH HHS SC3 GM105561
6 · The paper itself

Abstract

Apolipoprotein E (apoE) is an anti-atherogenic protein that plays a critical role in maintaining plasma cholesterol and triglyceride homeostasis by virtue of its ability to act as a ligand for the low-density lipoprotein receptor (LDLr) family of proteins. In this study, we characterized the biochemical and biophysical features of recombinant rat apoE, in comparison with those of human apoE3. Rat apoE was overexpressed in Escherichia coli using a codon optimized system and purified by affinity chromatography. SDS-PAGE and RP-HPLC of rat apoE confirmed the purity, while immunoblot verified the identity and cross-reactivity with the LDLr-binding region of apoE3. The α-helical content was calculated to be ~45% by circular dichroism spectroscopy. The protein exists in a predominantly tetrameric form in lipid-free state. Chemical denaturation studies reveal that the unfolding pattern is biphasic with mid points of denaturation corresponding to 0.8 and 2.2 M guanidine hydrochloride, suggesting the presence of two domains. Rat apoE converts DMPC vesicles to smaller DMPC/apoE complexes with a first order rate constant of 0.12 min(-1). It has the ability to bind the LDLr and to heparin. Our studies indicate that although its sequence resembles apoE4, an isoform of apoE3, rat apoE displays the biophysical behavior of apoE3.

Indexed as

Amino Acid SequenceAnimalsApolipoprotein E3Apolipoprotein E4Circular DichroismDimyristoylphosphatidylcholineElectrophoresis, Polyacrylamide GelEscherichia coliHeparinHumansHydrogen-Ion ConcentrationKineticsLigandsModels, MolecularMolecular Sequence DataProtein MultimerizationApolipoprotein E3Apolipoprotein E4DimyristoylphosphatidylcholineHeparinLigandsReceptors, LDLRecombinant Proteins

Identifiers

PMID23103361
PMCPMC3543869
OpenAlexW1986281316

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.