Evidence map›Paper›PMID 23102701›Full record

ArticleMolecular cell2012

Nuclear pore component Nup98 is a potential tumor suppressor and regulates posttranscriptional expression of select p53 target genes.

Stephan Singer, Ruiying Zhao, Anthony M Barsotti, Anette Ouwehand, Mina Fazollahi, Elias Coutavas, Kai Breuhahn, Olaf Neumann, Thomas Longerich, Tobias Pusterla and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 65 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Nuclear mRNA export.Acta biochimica et biophysica Sinica · 2024
    Review
  5. Advances in the understanding of nuclear pore complexes in human diseases.Journal of cancer research and clinical oncology · 2024
    Review
  6. Review
  7. Review
  8. Article
  9. Structure and Function of the Nuclear Pore Complex.Cold Spring Harbor perspectives in biology · 2022
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. The Structure of the Nuclear Pore Complex (An Update).Annual review of biochemistry · 2019
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 10 institutions in 4 countries.

Stephan SingerDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Ruiying Zhao
Anthony M Barsotti
Anette Ouwehand
Mina Fazollahi
Elias Coutavas
Kai Breuhahn
Olaf Neumann
Thomas Longerich
Tobias Pusterla
Maureen A Powers
Keith M Giles
Peter J Leedman
Jochen Hess
David Grunwald
Harmen J Bussemaker
Robert H Singer
Peter Schirmacher
Carol Prives
Columbia University · USHeidelberg University · DEDelft University of Technology · NLAlbert Einstein College of Medicine · USEmory University · USGerman Cancer Research Center · DEHarry Perkins Institute of Medical Research · AUHoward Hughes Medical Institute · USUniversity Hospital Heidelberg · DEUniversity of Western Australia · AU

Funding

Nation Center: Multi-Scale Study- Cellular Networks(RMI)U54CA121852 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2005 to 2015
$37.4M
Inferring regulatory circuitry from microarray dataR01HG003008 · NHGRI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI BUSSEMAKER, HARMEN J · 2004 to 2020
$7.0M
PROPERTIES AND REGULATION OF P53 IN TUMOR CELLSR01CA077742 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PRIVES, CAROL · 1999 to 2014
$3.8M
LIGHT-ACTIVATED GENE EXPRESSION IN SINGLE CELLS WITHIN TISSUER01GM086217 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI SINGER, ROBERT H · 2008 to 2011
$2.9M
Training Program in Computational BiologyT32GM082797 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HONIG, BARRY H · 2008 to 2015
$1.4M
NCI NIH HHS CA77742NCI NIH HHS R01 CA077742NCI NIH HHS U54 CA121852NCI NIH HHS U54CA121852NHGRI NIH HHS R01 HG003008NHGRI NIH HHS R01HG003008NIGMS NIH HHS GM86217NIGMS NIH HHS R01 GM086217NIGMS NIH HHS T32 GM082797NIGMS NIH HHS T32GM082797
6 · The paper itself

Abstract

The p53 tumor suppressor utilizes multiple mechanisms to selectively regulate its myriad target genes, which in turn mediate diverse cellular processes. Here, using conventional and single-molecule mRNA analyses, we demonstrate that the nucleoporin Nup98 is required for full expression of p21, a key effector of the p53 pathway, but not several other p53 target genes. Nup98 regulates p21 mRNA levels by a posttranscriptional mechanism in which a complex containing Nup98 and the p21 mRNA 3'UTR protects p21 mRNA from degradation by the exosome. An in silico approach revealed another p53 target (14-3-3σ) to be similarly regulated by Nup98. The expression of Nup98 is reduced in murine and human hepatocellular carcinomas (HCCs) and correlates with p21 expression in HCC patients. Our study elucidates a previously unrecognized function of wild-type Nup98 in regulating select p53 target genes that is distinct from the well-characterized oncogenic properties of Nup98 fusion proteins.

Indexed as

RNA Processing, Post-Transcriptional14-3-3 Proteins3' Untranslated RegionsAnimalsAntineoplastic Agents, PhytogenicApoptosisATP-Binding Cassette Sub-Family B Member 4ATP Binding Cassette Transporter, Subfamily BBinding SitesCamptothecinCarcinoma, HepatocellularCellular SenescenceCyclin-Dependent Kinase Inhibitor p21ExosomesGene Expression Regulation, NeoplasticHep G2 Cells14-3-3 Proteins3' Untranslated RegionsAntineoplastic Agents, PhytogenicATP-Binding Cassette Sub-Family B Member 4ATP Binding Cassette Transporter, Subfamily BCamptothecinCDKN1A protein, humanCyclin-Dependent Kinase Inhibitor p21Nuclear Pore Complex ProteinsNup98 protein, humanRNA, MessengerTP53 protein, humanTumor Suppressor Protein p53YWHAB protein, human

Identifiers

PMID23102701
PMCPMC3525737
OpenAlexW2156510716

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.