Evidence map›Paper›PMID 23097491›Full record

ArticleMolecular biology of the cell2012

Tor1 regulates protein solubility in Saccharomyces cerevisiae.

Theodore W Peters, Matthew J Rardin, Gregg Czerwieniec, Uday S Evani, Pedro Reis-Rodrigues, Gordon J Lithgow, Sean D Mooney, Bradford W Gibson, Robert E Hughes

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Role ofInternational journal of molecular sciences · 2021
    Article
  5. Arsenic Exposure and Compromised Protein Quality Control.Chemical research in toxicology · 2020
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Role of Proteome Physical Chemistry in Cell Behavior.The journal of physical chemistry. B · 2016
    Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Theodore W PetersThe Buck Institute for Research on Aging, Novato, CA 94945, USA.
Matthew J Rardin
Gregg Czerwieniec
Uday S Evani
Pedro Reis-Rodrigues
Gordon J Lithgow
Sean D Mooney
Bradford W Gibson
Robert E Hughes

Funding

STANFORD COMPOSITE(RMI)U54HG004028 · NHGRI · STANFORD UNIVERSITY · PI MUSEN, MARK A · 2005 to 2014
$36.2M
Training in Basic Research on Aging and Age-Related DiseaseT32AG000266 · NIA · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Lisa M Ellerby · 1998 to 2026
$13.8M
Pharmacology of LIfespan ExtensionR01AG029631 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI LITHGOW, GORDON J · 2008 to 2018
$5.4M
Mass spectrometry and imaging technologies in GerosciencePL1AG032118 · NIA · BUCK INSTITUTE FOR RESEARCH ON AGING · PI GIBSON, BRADFORD WAYNE · 2007 to 2011
$4.5M
Informatic Profiling of Clinically Relevant MutationR01LM009722 · NLM · UNIVERSITY OF WASHINGTON · PI MOONEY, SEAN DAVID · 2007 to 2014
$3.5M
Protein Interactions and Protein Conformation in Aging and Disease (6 of 11)RL1GM084432 · NIGMS · BUCK INSTITUTE FOR RESEARCH ON AGING · PI HUGHES, ROBERT E · 2007 to 2011
$2.4M
QSTAR Elite Quadrupole-o-TOF LC/MS/MS SystemS10RR024615 · NCRR · BUCK INSTITUTE FOR RESEARCH ON AGING · PI GIBSON, BRADFORD WAYNE · 2007 to 2007
$466k
NCRR NIH HHS S10 RR024615NHGRI NIH HHS U54 HG004028NHGRI NIH HHS U54-HG004028NIA NIH HHS 1R01 AG029631-01A1NIA NIH HHS PL1 AG032118NIA NIH HHS R01 AG029631NIA NIH HHS T32 AG000266NIGMS NIH HHS RL1 GM084432NLM NIH HHS R01 LM009722
6 · The paper itself

Abstract

Accumulation of insoluble protein in cells is associated with aging and aging-related diseases; however, the roles of insoluble protein in these processes are uncertain. The nature and impact of changes to protein solubility during normal aging are less well understood. Using quantitative mass spectrometry, we identify 480 proteins that become insoluble during postmitotic aging in Saccharomyces cerevisiae and show that this ensemble of insoluble proteins is similar to those that accumulate in aging nematodes. SDS-insoluble protein is present exclusively in a nonquiescent subpopulation of postmitotic cells, indicating an asymmetrical distribution of this protein. In addition, we show that nitrogen starvation of young cells is sufficient to cause accumulation of a similar group of insoluble proteins. Although many of the insoluble proteins identified are known to be autophagic substrates, induction of macroautophagy is not required for insoluble protein formation. However, genetic or chemical inhibition of the Tor1 kinase is sufficient to promote accumulation of insoluble protein. We conclude that target of rapamycin complex 1 regulates accumulation of insoluble proteins via mechanisms acting upstream of macroautophagy. Our data indicate that the accumulation of proteins in an SDS-insoluble state in postmitotic cells represents a novel autophagic cargo preparation process that is regulated by the Tor1 kinase.

Indexed as

AutophagyAutophagy-Related Protein 7Autophagy-Related ProteinsElectrophoresis, Polyacrylamide GelMass SpectrometryMechanistic Target of Rapamycin Complex 1MitosisMultiprotein ComplexesMutationNitrogenPhosphatidylinositol 3-KinasesPhosphorylationProtein KinasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSodium Dodecyl SulfateATG1 protein, S cerevisiaeATG7 protein, S cerevisiaeAutophagy-Related Protein 7Autophagy-Related ProteinsMechanistic Target of Rapamycin Complex 1Multiprotein ComplexesNitrogenPhosphatidylinositol 3-KinasesProtein KinasesSaccharomyces cerevisiae ProteinsSodium Dodecyl SulfateTOR1 protein, S cerevisiaeTOR Serine-Threonine Kinases

Identifiers

PMID23097491
PMCPMC3521677

What OpenQuestion holds

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LicenceCC BY-NC-SA
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.