Evidence map›Paper›PMID 23096700›Full record

ArticleThe Journal of investigative dermatology2013

Copy number variation analysis in 98 individuals with PHACE syndrome.

Dawn H Siegel, Joseph T C Shieh, Eun-Kyung Kwon, Eulalia Baselga, Francine Blei, Maria Cordisco, William B Dobyns, Kelly J Duffy, Maria C Garzon, David L Gibbs and 18 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of investigative dermatology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Review
  3. PHACE syndrome: looking backward and forward.Orphanet journal of rare diseases · 2025
    Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Structure and function of nucleotide sugar transporters: Current progress.Computational and structural biotechnology journal · 2014
    Review
  14. Pathogenesis of infantile haemangioma.The British journal of dermatology · 2013
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 12 institutions in 4 countries.

Dawn H SiegelDepartments of Dermatology and Pediatrics, Medical College of Wisconsin, Milwaukee, Wisconsin, USA. Electronic address: dsiegel@mcw.edu.
Joseph T C ShiehDepartment of Pediatrics, University of California, San Francisco, San Francisco, California, USA.
Eun-Kyung KwonDepartment of Dermatology, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
Eulalia BaselgaDepartment of Dermatology, Hospital de la Santa Creu I Sant Pau, Barcelona, Spain.
Francine BleiDepartment of Hematology and Oncology, Vascular Birthmark Institute of New York, New York, New York, USA.
Maria CordiscoDepartment of Dermatology, Hospital de Pediatria JP Garrahan, Buenos Aires, Argentina.
William B DobynsDepartments of Pediatrics and Neurology, University of Washington, Seattle, Washington, USA.
Kelly J DuffyDepartment of Radiology, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
Maria C GarzonDepartments of Dermatology and Pediatrics, Columbia University, Columbia, New York, USA.
David L GibbsDepartment of Bioinformatics and Computational Biology, Oregon Health & Science University, Portland, Oregon, USA.
Johannes F GrimmerDepartments of Surgery and Otolaryngology, University of Utah, Salt Lake City, Utah, USA.
Susan J HayflickDepartments of Molecular and Medical Genetics, Pediatrics, and Neurology, Oregon Health & Science University, Portland, Oregon, USA.
Alfons L KrolDepartments of Dermatology and Pediatrics, Oregon Health & Science University, Portland, Oregon, USA.
Pui-Yan KwokDepartment of Cardiovascular Research, University of California, San Francisco, San Francisco, California, USA.
Rachel LorierDepartment of Human and Molecular Genetics, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
Andrea MatterDepartment of Human and Molecular Genetics, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
Shannon McWeeneyDepartment of Biostatistics, Oregon Health & Science University, Portland, Oregon, USA.
Denise MetryDepartment of Dermatology, Baylor College of Medicine, Houston, Texas, USA.
Sheri MitchellARUP Clinical & Experimental Pathology, ARUP Laboratories, Salt Lake City, Utah, USA.
Elena PopeDepartments of Pediatrics and Dermatology, University of Toronto, Toronto, Ontario, Canada.
Jennifer L SantoroDepartment of Dermatology, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
David A StevensonDepartment of Pediatrics, University of Utah, Salt Lake City, Utah, USA.
Pinar Bayrak-ToydemirDepartment of Pathology, University of Utah, Salt Lake City, Utah, USA.
Beth WilmotDepartment of Biostatistics, Oregon Health & Science University, Portland, Oregon, USA.
Elizabeth A WortheyDepartment of Pediatrics, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
Ilona J FriedenDepartments of Dermatology and Pediatrics, University of California, San Francisco, San Francisco, California, USA.
Beth A DroletDepartments of Dermatology and Pediatrics, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
Ulrich BroeckelDepartment of Pediatrics, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
Medical College of Wisconsin · USOregon Health & Science University · USUniversity of California, San Francisco · USUniversity of Utah · USARUP Laboratories (United States) · USBaylor College of Medicine · USColumbia University · USGarrahan Hospital · ARHospital de Sant Pau · ESUniversity of Toronto · CAUniversity of Washington · USVascular Institute of New York · US

Funding

OREGON CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR024140 · NCRR · OREGON HEALTH & SCIENCE UNIVERSITY · PI ORWOLL, ERIC S. · 2006 to 2011
$61.1M
Oregon Clinical and Translational Research InstituteUL1TR000128 · NCATS · OREGON HEALTH & SCIENCE UNIVERSITY · PI ELLISON, DAVID H · 2012 to 2015
$28.7M
UNIVERSITY OF UTAH CENTER FOR CLINICAL AND TRANSLATIONAL SCIENCE-UL1: BPCAUL1RR025764 · NCRR · UNIVERSITY OF UTAH · PI MCCLAIN, DONALD A. · 2008 to 2011
$19.4M
Role of MicroRNA-499 in the HeartK08HL092970 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHIEH, JOSEPH T · 2009 to 2013
$627k
EXTRAMURAL RESEARCH FACILITIES CONSTRUCTIONC06RR011234 · NCRR · UNIVERSITY OF UTAH · PI MATSEN, JOHN M · 1995 to 1995
–
NCATS NIH HHS UL1 TR000128NCRR NIH HHS C06 RR011234NCRR NIH HHS UL1 RR024140NCRR NIH HHS UL1 RR025764NCRR NIH HHS UL1-RR025764NHLBI NIH HHS K08 HL092970NHLBI NIH HHS K08HL092970
6 · The paper itself

Abstract

PHACE syndrome is the association of large segmental facial hemangiomas and congenital anomalies, such as posterior fossa malformations, cerebral arterial anomalies, coarctation of the aorta, eye anomalies, and sternal defects. To date, the reported cases of PHACE syndrome have been sporadic, suggesting that PHACE may have a complex pathogenesis. We report here genomic copy number variation (CNV) analysis of 98 individuals with PHACE syndrome as a first step in deciphering a potential genetic basis of PHACE syndrome. A total of 3,772 CNVs (2,507 duplications and 1,265 deletions) were detected in 98 individuals with PHACE syndrome. CNVs were then eliminated if they failed to meet established criteria for quality, spanned centromeres, or did not contain genes. CNVs were defined as "rare" if not documented in the database of genomic variants. Ten rare CNVs were discovered (size range: 134-406  kb), located at 1q32.1, 1q43, 3q26.32-3q26.33, 3p11.1, 7q33, 10q24.32, 12q24.13, 17q11.2, 18p11.31, and Xq28. There were no rare CNV events that occurred in more than one subject. Therefore, further study is needed to determine the significance of these CNVs in the pathogenesis of PHACE syndrome.

Indexed as

AdolescentAdultAortic CoarctationCase-Control StudiesChildChild, PreschoolDNADNA Copy Number VariationsEye AbnormalitiesFemaleGenotyping TechniquesHumansInfantMaleNeurocutaneous SyndromesReproducibility of ResultsDNA

Identifiers

PMID23096700
PMCPMC3971866
OpenAlexW2069411507

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.