Evidence map›Paper›PMID 23095756›Full record

ArticleThe Journal of biological chemistry2012

Human exonuclease 5 is a novel sliding exonuclease required for genome stability.

Justin L Sparks, Rakesh Kumar, Mayank Singh, Marc S Wold, Tej K Pandita, Peter M Burgers

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Genetic Factors and Long-term Treatment-Related Neurocognitive Deficits, Anxiety, and Depression in Childhood Leukemia Survivors: An Exome-Wide Association Study.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2024
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Justin L SparksDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. Louis, Missouri 63110, USA.
Rakesh Kumar
Mayank Singh
Marc S Wold
Tej K Pandita
Peter M Burgers
The University of Texas Southwestern Medical Center · USWashington University in St. Louis · USUniversity of Iowa · US

Funding

ENZYMOLOGY OF REPLICATION OF YEAST CHROMOSOMAL DNAR01GM032431 · NIGMS · WASHINGTON UNIVERSITY · PI BURGERS, PETER M · 1985 to 2015
$6.5M
CHROMATIN MODIFYING FACTORS CONTROL RADIATION RESPONSE AND GENOMIC STABILITYR01CA129537 · NCI · WASHINGTON UNIVERSITY · PI PANDITA, TEJ K · 2008 to 2018
$3.3M
FUNCTIONAL ROLES OF CELLULAR PROTEINS IN DNA REPLICATIONR01GM044721 · NIGMS · UNIVERSITY OF IOWA · PI WOLD, MARC S · 1990 to 2009
$2.2M
KINASE ACTIVATION IN THE DNA DAMAGE CHECKPOINTSR01GM083970 · NIGMS · WASHINGTON UNIVERSITY · PI BURGERS, PETER M · 2009 to 2016
$2.1M
Tumor-cell-specific targets for combined hyperthermia and radiation effectsR01CA154320 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI PANDITA, TEJ K · 2010 to 2014
$1.6M
Functional Characterization of the Mammalian MOF Gene ProductR01CA123232 · NCI · WASHINGTON UNIVERSITY · PI PANDITA, TEJ K · 2007 to 2011
$1.5M
NCI NIH HHS CA123232NCI NIH HHS CA129537NCI NIH HHS CA154320NCI NIH HHS R01 CA123232NCI NIH HHS R01 CA129537NCI NIH HHS R01 CA154320NIGMS NIH HHS GM032431NIGMS NIH HHS GM083970NIGMS NIH HHS GM44721NIGMS NIH HHS R01 GM032431NIGMS NIH HHS R01 GM044721NIGMS NIH HHS R01 GM083970PHS HHS U19A1091175
6 · The paper itself

Abstract

Previously, we characterized Saccharomyces cerevisiae exonuclease 5 (EXO5), which is required for mitochondrial genome maintenance. Here, we identify the human homolog (C1orf176; EXO5) that functions in the repair of nuclear DNA damage. Human EXO5 (hEXO5) contains an iron-sulfur cluster. It is a single-stranded DNA (ssDNA)-specific bidirectional exonuclease with a strong preference for 5'-ends. After loading at an ssDNA end, hEXO5 slides extensively along the ssDNA prior to cutting, hence the designation sliding exonuclease. However, the single-stranded binding protein human replication protein A (hRPA) restricts sliding and enforces a unique, species-specific 5'-directionality onto hEXO5. This specificity is lost with a mutant form of hRPA (hRPA-t11) that fails to interact with hEXO5. hEXO5 localizes to nuclear repair foci in response to DNA damage, and its depletion in human cells leads to an increased sensitivity to DNA-damaging agents, in particular interstrand cross-linking-inducing agents. Depletion of hEXO5 also results in an increase in spontaneous and damage-induced chromosome abnormalities including the frequency of triradial chromosomes, suggesting an additional defect in the resolution of stalled DNA replication forks in hEXO5-depleted cells.

Indexed as

Genomic InstabilityAmino Acid SequenceBiocatalysisChromosome AberrationsConserved SequenceCross-Linking ReagentsDNA RepairDNA, Single-StrandedExonucleasesGenome, HumanHumansIron-Sulfur ProteinsMolecular Sequence DataProtein BindingProtein MultimerizationReplication Protein ACross-Linking ReagentsDNA, Single-StrandedEXO5 protein, humanExonucleasesIron-Sulfur ProteinsReplication Protein ARPA1 protein, human

Identifiers

PMID23095756
PMCPMC3522276
OpenAlexW2044951540

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.