Evidence map›Paper›PMID 23095741›Full record

ArticleThe Journal of biological chemistry2012

Dual role for motif 1 residues of human lysyl-tRNA synthetase in dimerization and packaging into HIV-1.

Varun Dewan, Min Wei, Lawrence Kleiman, Karin Musier-Forsyth

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. HIV Genome-Wide Protein Associations: a Review of 30 Years of Research.Microbiology and molecular biology reviews : MMBR · 2016
    Pooled it
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  14. [New aspects on the pathogenesis of myositis].Zeitschrift fur Rheumatologie · 2013
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Varun DewanDepartment of Chemistry and Biochemistry, Ohio State Biochemistry Program, Center for RNA Biology, The Ohio State University, Columbus, Ohio 43210, USA.
Min Wei
Lawrence Kleiman
Karin Musier-Forsyth
Jewish General Hospital · CAThe Ohio State University · US

Funding

Development of the Gag/Lysyl tRNA synthetase interaction as a target for anti-HIVR01AI077387 · NIAID · SIR MORTIMER B. DAVIS JEWISH GEN HOSP · PI KLEIMAN, LAWRENCE · 2008 to 2012
$3.1M
NIAID NIH HHS AI077387NIAID NIH HHS R01 AI077387
6 · The paper itself

Abstract

The primer for reverse transcription in human immunodeficiency virus type 1, human tRNA(Lys,3), is selectively packaged into the virion along with tRNA(Lys1,2). Human lysyl-tRNA synthetase (hLysRS), the only cellular factor known to interact specifically with all three tRNA(Lys) isoacceptors, is also selectively packaged into HIV-1. We have previously defined a tRNA(Lys) packaging complex that includes the tRNA(Lys) isoacceptors, LysRS, HIV-1 Gag, GagPol, and viral RNA. Numerous studies support the hypothesis that during tRNA(Lys) packaging, a Gag·GagPol complex interacts with a tRNA(Lys)·LysRS complex, with Gag interacting specifically with the catalytic domain of LysRS, and GagPol interacting with both Gag and tRNA(Lys). In this work, we have identified residues along one face of the motif 1 dimerization helix (H7) of hLysRS that are critical for packaging of the synthetase into virions. Mutation of these residues affects binding to Gag in vitro, as well as the oligomerization state and aminoacylation activity of the synthetase. Taken together, these data suggest that H7 of LysRS has a dual function. In its canonical role it maintains the synthetase dimer interface, whereas in its function in tRNA primer recruitment, it bridges interactions with HIV-1 Gag.

Indexed as

Protein MultimerizationAmino Acid MotifsCatalytic DomainFusion Proteins, gag-polgag Gene Products, Human Immunodeficiency VirusHEK293 CellsHIV-1HIV InfectionsHumansLysine-tRNA LigaseMutation, MissenseRNA, ViralVirus AssemblyFusion Proteins, gag-polgag Gene Products, Human Immunodeficiency VirusLysine-tRNA LigaseRNA, Viral

Identifiers

PMID23095741
PMCPMC3516742
OpenAlexW1974298114

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.