Evidence map›Paper›PMID 23094081›Full record

ArticlePloS one2012

The carboxyl-terminus of human immunodeficiency virus type 2 circulating recombinant form 01_AB capsid protein affects sensitivity to human TRIM5α.

Tadashi Miyamoto, Emi E Nakayama, Masaru Yokoyama, Shiro Ibe, Shunpei Takehara, Ken Kono, Yoshiyuki Yokomaku, Massimo Pizzato, Jeremy Luban, Wataru Sugiura and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Impact of TRIM5α in vivo.AIDS (London, England) · 2015
    Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Tadashi MiyamotoDepartment of Viral Infections, Research Institute for Microbial Diseases, Osaka University, Suita Osaka, Japan.
Emi E Nakayama
Masaru Yokoyama
Shiro Ibe
Shunpei Takehara
Ken Kono
Yoshiyuki Yokomaku
Massimo Pizzato
Jeremy Luban
Wataru Sugiura
Hironori Sato
Tatsuo Shioda
Osaka University · JPNagoya Medical Center · JPNational Institute of Infectious Diseases · JPUniversity of Geneva · CHNational Hospital Organization · JP

Funding

Cyclophilin A Function in the Immune SystemR01AI059159 · NIAID · UNIVERSITY OF GENEVA · PI LUBAN, JEREMY · 2006 to 2011
$1.4M
NIAID NIH HHS R01 AI059159NIAID NIH HHS R01AI59159
6 · The paper itself

Abstract

Human immunodeficiency virus (HIV) type 2 shows limited geographical distribution compared with HIV type 1. Although 8 genetic groups of HIV type 2 (HIV-2) have been described, recombinant viruses between these groups are rarely observed. Recently, three HIV-2 patients in Japan were described with rapidly progressive, acquired immunodeficiency. These patients were infected with an A/B inter-group recombinant designated CRF01_AB. Here, we characterize the capsid protein (CA) encoded by the viruses from these patients. HIV-2 CRF01_AB CA showed unique amino acid sequence almost equally distinct from group A and group B viruses. Notably, HIV-2 CRF01_AB CA showed potent resistance to human TRIM5α. In addition to the previously identified amino acid position 119 in the N-terminal domain of CA, we found that HIV-2 CRF01_AB-specific amino acid substitutions in the C-terminal domain also were necessary for resistance to human TRIM5α. These results indicate that retroviruses can evade TRIM5α by substitution at residues within the C-terminal domain of CA.

Indexed as

AdultAmino Acid SequenceAmino Acid SubstitutionAntiviral Restriction FactorsCapsid ProteinsCarrier ProteinsCell LineHIV-1HIV-2HIV InfectionsHost-Pathogen InteractionsHumansJapanJurkat CellsModels, MolecularMolecular Sequence DataAntiviral Restriction FactorsCapsid ProteinsCarrier ProteinsMutant Chimeric ProteinsTRIM5 protein, humanTripartite Motif ProteinsUbiquitin-Protein Ligases

Identifiers

PMID23094081
PMCPMC3477128
OpenAlexW1993776926

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.