Evidence map›Paper›PMID 23094059›Full record

ArticlePloS one2012

Causes of death on antiretroviral therapy: a post-mortem study from South Africa.

Emily B Wong, Tanvier Omar, Gosetsemang J Setlhako, Regina Osih, Charles Feldman, David M Murdoch, Neil A Martinson, David R Bangsberg, W D F Venter

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers, 7 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed, 7 pooled it
10.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed, 7 syntheses or guidelines pooled it, 145 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Pooled it
  6. Pooled it
  7. Pooled it
  8. Trial
  9. Trial
  10. Trial
  11. Trial
  12. Trial
  13. Verbal autopsy-assigned causes of death among adults being investigated for TB in South Africa.Transactions of the Royal Society of Tropical Medicine and Hygiene · 2016
    Trial
  14. Trial
  15. Trial
  16. Trial
  17. Trial
  18. Article
  19. Observational
  20. Review

33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Emily B WongWits Reproductive Health and HIV Institute, University of the Witwatersrand, Johannesburg, South Africa. emily.wong@k-rith.org
Tanvier Omar
Gosetsemang J Setlhako
Regina Osih
Charles Feldman
David M Murdoch
Neil A Martinson
David R Bangsberg
W D F Venter
University of the Witwatersrand · ZADuke Medical Center · USHarvard University · USJohannesburg Hospital · ZAJohns Hopkins University · US

Funding

The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI ROBERT A. PARKER · 2004 to 2026
$94.4M
Fogarty International Clinical Research Scholars Support Center @ Vanderbilt-AAMCR24TW007988 · FIC · VANDERBILT UNIVERSITY · PI VERMUND, STEN H. · 2007 to 2011
$27.6M
TUBERCULOSIS INTERNATIONAL TRAINING AND RESEARCH PROGRAMD43TW000010 · FIC · JOHNS HOPKINS UNIVERSITY · PI BEYRER, CHRISTOPHER C. · 1988 to 2012
$19.8M
Multidisciplinary HIV Training ProgramT32AI007387 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI Daniel R. Kuritzkes · 1990 to 2026
$8.8M
South Africa Tuberculosis/AIDS TrainingU2RTW007373 · FIC · UNIV OF NORTH CAROLINA CHAPEL HILL · PI VAN DER HORST, CHARLES MICHAEL · 2007 to 2012
$1.4M
Mentoring Patient Oriented Adherence Research in UgandaK24MH087227 · NIMH · MASSACHUSETTS GENERAL HOSPITAL · PI BANGSBERG, DAVID ROY · 2009 to 2013
$776k
The Role of Immune Reconstitution Inflammatory Syndrome (IRIS) in Pulmonary TuberK01TW008005 · FIC · DUKE UNIVERSITY · PI MURDOCH, DAVID MARTIN · 2008 to 2011
$450k
FIC NIH HHS D43 TW000010FIC NIH HHS D43TW000010-21S1FIC NIH HHS K01 TW008005FIC NIH HHS R24 TW007988FIC NIH HHS R24TW007988FIC NIH HHS U2R TW007373NIAID NIH HHS P30 AI060354NIAID NIH HHS T32 AI007387NIMH NIH HHS K24 MH087227PEPFARPHS HHS 674-A-00-08-00005-00PHS HHS RTW007373/0
6 · The paper itself

Abstract

backgroundMortality in the first months of antiretroviral therapy (ART) is a significant clinical problem in sub-Saharan Africa. To date, no post-mortem study has investigated the causes of mortality in these patients.

methodsHIV-positive adults who died as in-patients at a Johannesburg academic hospital underwent chart-review and ultrasound-guided needle autopsy for histological and microbiological examination of lung, liver, spleen, kidney, bone marrow, lymph node, skin and cerebrospinal fluid. A clinico-pathologic committee considered all available data and adjudicated immediate and contributing causes of death.

resultsThirty-nine adults were enrolled: 14 pre-ART, 15 early-ART (7-90 days), and 10 late-ART (>90 days). Needle sampling yielded adequate specimen in 100% of kidney, skin, heart and cerebrospinal fluid samples, 97% of livers and lungs, 92% of bone marrows, 87% of spleens and 68% of lymph nodes. Mycobacterial infections were implicated in 69% of deaths (26 of 27 of these due to M. tuberculosis), bacterial infections in 33%, fungal infections in 21%, neoplasm in 26%, and non-infectious organ failure in 26%. Immune reconstitution inflammatory syndrome (IRIS) was implicated in 73% of early-ART deaths. Post-mortem investigations revealed previously undiagnosed causes of death in 49% of cases. Multiple pathologies were common with 62% of subjects with mycobacterial infection also having at least one other infectious or neoplastic cause of death.

conclusionsNeedle biopsy was efficient and yielded excellent pathology. The large majority of deaths in all three groups were caused by M. tuberculosis suggesting an urgent need for improved diagnosis and expedited treatment prior to and throughout the course of antiretroviral therapy. Complex, unrecognized co-morbidities pose an additional challenge.

Indexed as

Antiretroviral Therapy, Highly ActiveAdultAutopsyBacterial InfectionsBiopsy, NeedleBone MarrowCause of DeathFemaleHIVHIV InfectionsHumansImmune Reconstitution Inflammatory SyndromeKidneyLiverLungLymph Nodes

Identifiers

PMID23094059
PMCPMC3472995
OpenAlexW2148389844

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.